| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os03g62860.1 |
| Family | CBM43 |
| Protein Properties | Length: 475 Molecular Weight: 51191.3 Isoelectric Point: 8.0306 |
| Chromosome | Chromosome/Scaffold: 3 Start: 35558704 End: 35561180 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 382 | 467 | 1.8e-23 |
| WCVVGAAAANETAVREQMEAACADEAALCAPVRAGGECYLPNTVAAHASYVFSAHWNKFSKVYGGWCYFAGLAMETTTDPSHGSCK | |||
| GH17 | 27 | 354 | 0 |
| LGVNYGRLGDDLPPPHRALELARSAGAAAVRFYDSNATFLSPAAASGLVFVPGVPNELIPSLAASRRAADEWVAATLLPFRRNRRLRYLFVGNEVLSDPT TKSRWFQLVPAMANLERALRRHGMRRVKVSTTLGMDALDGQNVFPPSAGVFRPDIADAVVRPLLAFLERTDSYLFVDAYTYFTWSANHTIVPLHYALLEP SPSPSPAYQYHDPGTGLSYTNLLDHMLDAVVAAMCRAGHCGVRMALAETGWPNAGDLDQFGANARNAATYNRNMARHLASGAGTPRRPGMRMPAFVFALF NEDLKTGPATERHWGLFHPNGSAVYEVD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 475 Download |
| MAMASSRLPL QLLLVVGAAA SEIAHFLGVN YGRLGDDLPP PHRALELARS AGAAAVRFYD 60 SNATFLSPAA ASGLVFVPGV PNELIPSLAA SRRAADEWVA ATLLPFRRNR RLRYLFVGNE 120 VLSDPTTKSR WFQLVPAMAN LERALRRHGM RRVKVSTTLG MDALDGQNVF PPSAGVFRPD 180 IADAVVRPLL AFLERTDSYL FVDAYTYFTW SANHTIVPLH YALLEPSPSP SPAYQYHDPG 240 TGLSYTNLLD HMLDAVVAAM CRAGHCGVRM ALAETGWPNA GDLDQFGANA RNAATYNRNM 300 ARHLASGAGT PRRPGMRMPA FVFALFNEDL KTGPATERHW GLFHPNGSAV YEVDLTGRRP 360 PASYPPLPPP ATNDAPYPGK LWCVVGAAAA NETAVREQME AACADEAALC APVRAGGECY 420 LPNTVAAHAS YVFSAHWNKF SKVYGGWCYF AGLAMETTTD PSHGSCKFPS VTPS* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 1.0e-5 | 381 | 455 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 3.0e-24 | 381 | 468 | 88 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 8.0e-79 | 27 | 354 | 329 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005488 | binding |
| GO:0005575 | cellular_component |
| GO:0005618 | cell wall |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC76519.1 | 0 | 1 | 474 | 1 | 474 | hypothetical protein OsI_14305 [Oryza sativa Indica Group] |
| RefSeq | NP_001051879.1 | 0 | 1 | 474 | 1 | 474 | Os03g0845600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001063586.1 | 0 | 13 | 470 | 20 | 477 | Os09g0502200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002462618.1 | 0 | 27 | 470 | 37 | 478 | hypothetical protein SORBIDRAFT_02g029080 [Sorghum bicolor] |
| RefSeq | XP_002463526.1 | 0 | 9 | 471 | 4 | 480 | hypothetical protein SORBIDRAFT_01g001430 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghs_B | 0 | 27 | 355 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 27 | 355 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 2cyg_A | 0 | 27 | 355 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_D | 0 | 27 | 356 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_C | 0 | 27 | 356 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
