| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os08g12800.1 |
| Family | CBM43 |
| Protein Properties | Length: 495 Molecular Weight: 52418.4 Isoelectric Point: 5.0518 |
| Chromosome | Chromosome/Scaffold: 8 Start: 7583446 End: 7588419 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM43 | 373 | 454 | 1.1e-26 |
| WCVMKPSASLVDQKVGDGVSYACGLADCTSLGYKTSCGGLDAKGNVSYAFNSYYQVNDQDDRACDFKGIATTTTVDPSAGSC | |||
| GH17 | 29 | 346 | 0 |
| IGVNWGTQLSHPLPASTVVQLLKDNGFDRVKLFDAEDGILAALKGSGIQVMVGIPNDMLADLAAGAKAADDWVATNVSNHVNNGVDIRYVAVGNEPFLET FNGTYLNTTFPAMQSVQAALKKAGLADKVKVTVPLNADVYQSPTGKPSDGDFRADIHGLMLTIVQFLADTGAPFVANVYPFISLYKDPNFPLDYAFFQGS SAPVVDGGVTYQNTFDANHDTLVAALRRNGYPNVSIIVGEVGWPTDGDANANPQYARQFNQGFLTHIASGQGTPLRPGPVDAYLFSLIDEDQKSIEPGNF ERHWGVFYYDGQPKYPLS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 495 Download |
| MAPAPLAGGR LVLVVVVAAA CMARWSEGIG VNWGTQLSHP LPASTVVQLL KDNGFDRVKL 60 FDAEDGILAA LKGSGIQVMV GIPNDMLADL AAGAKAADDW VATNVSNHVN NGVDIRYVAV 120 GNEPFLETFN GTYLNTTFPA MQSVQAALKK AGLADKVKVT VPLNADVYQS PTGKPSDGDF 180 RADIHGLMLT IVQFLADTGA PFVANVYPFI SLYKDPNFPL DYAFFQGSSA PVVDGGVTYQ 240 NTFDANHDTL VAALRRNGYP NVSIIVGEVG WPTDGDANAN PQYARQFNQG FLTHIASGQG 300 TPLRPGPVDA YLFSLIDEDQ KSIEPGNFER HWGVFYYDGQ PKYPLSLRGG GNGNGNGSTL 360 MPAKGVTYLQ RRWCVMKPSA SLVDQKVGDG VSYACGLADC TSLGYKTSCG GLDAKGNVSY 420 AFNSYYQVND QDDRACDFKG IATTTTVDPS AGSCRFIIEI APTANGVAMA ATVRVAGVMA 480 AILAVFIHLV VPVF* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd02070 | corrinoid_protein_B12-BD | 0.006 | 134 | 166 | 36 | + B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases. | ||
| COG5309 | COG5309 | 1.0e-5 | 261 | 338 | 80 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-19 | 372 | 443 | 79 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-31 | 373 | 456 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 5.0e-80 | 29 | 346 | 320 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005488 | binding |
| GO:0005575 | cellular_component |
| GO:0005618 | cell wall |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAZ06041.1 | 0 | 1 | 474 | 1 | 474 | hypothetical protein OsI_28283 [Oryza sativa Indica Group] |
| RefSeq | NP_001045844.1 | 0 | 27 | 460 | 30 | 456 | Os02g0139300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001061277.1 | 0 | 1 | 467 | 1 | 467 | Os08g0224500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001151032.1 | 0 | 32 | 460 | 36 | 462 | glucan endo-1,3-beta-glucosidase 6 [Zea mays] |
| RefSeq | XP_002445228.1 | 0 | 24 | 460 | 29 | 461 | hypothetical protein SORBIDRAFT_07g006340 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghr_A | 0 | 29 | 347 | 1 | 306 | A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein, Monoclinic Crystal Form |
| PDB | 1aq0_B | 0 | 29 | 347 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1aq0_A | 0 | 29 | 347 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 2cyg_A | 0 | 29 | 347 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_D | 0 | 29 | 347 | 2 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
