Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10002931 |
Family | GH28 |
Protein Properties | Length: 397 Molecular Weight: 43283.6 Isoelectric Point: 8.4251 |
Chromosome | Chromosome/Scaffold: 1060 Start: 31977 End: 33381 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 53 | 382 | 0 |
KACKSERESRIVIPEGNYVMGMVGLEGPCKSDEIHVQIDGYIKTPPTGLRGLSWITFSSLRNLQLYGNGTLDGQGPLASKASNNRKNMPHLPLATNLRFE SITNAIIQGLTSKDSRNFHIDVSRSKNVTLRSLTITAPLDSNTTVGIFLRRSHQVTISDATIQTGHYCIHLSDGSQEVNIHNMKCGPGGGGGVLLGTLGR SPDEEKVFDVAVVNSSFISTANGLRIEAVPGTINMASNISFDDITMDNVINPITIDQHFCQDKSCDKMEGKVKIKDVSFKNIKGSCASPLAINISCYNPS FCKNVQFTDIEFKPSSKNLEPLKFQCTNVK |
Full Sequence |
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Protein Sequence Length: 397 Download |
MNSSIVVSLS LWISFFTICT HGRDPKILDV TRFGAKPDDK TDITQGLMKA WIKACKSERE 60 SRIVIPEGNY VMGMVGLEGP CKSDEIHVQI DGYIKTPPTG LRGLSWITFS SLRNLQLYGN 120 GTLDGQGPLA SKASNNRKNM PHLPLATNLR FESITNAIIQ GLTSKDSRNF HIDVSRSKNV 180 TLRSLTITAP LDSNTTVGIF LRRSHQVTIS DATIQTGHYC IHLSDGSQEV NIHNMKCGPG 240 GGGGVLLGTL GRSPDEEKVF DVAVVNSSFI STANGLRIEA VPGTINMASN ISFDDITMDN 300 VINPITIDQH FCQDKSCDKM EGKVKIKDVS FKNIKGSCAS PLAINISCYN PSFCKNVQFT 360 DIEFKPSSKN LEPLKFQCTN VKIIKKGLVS PPNECQ* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-48 | 26 | 382 | 365 | + polygalacturonase | ||
PLN02793 | PLN02793 | 2.0e-55 | 20 | 392 | 382 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-55 | 23 | 391 | 376 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 2.0e-66 | 27 | 392 | 376 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 9.0e-69 | 55 | 383 | 336 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89478.1 | 0 | 27 | 390 | 30 | 389 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89479.1 | 0 | 27 | 390 | 30 | 389 | polygalacturonase [Salix gilgiana] |
Swiss-Prot | Q39766 | 0 | 4 | 391 | 10 | 392 | PGLR_GOSBA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
Swiss-Prot | Q39786 | 0 | 4 | 391 | 10 | 392 | PGLR_GOSHI RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002329175.1 | 0 | 3 | 390 | 7 | 389 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.00000000004 | 105 | 345 | 101 | 344 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 0.0000000001 | 107 | 381 | 76 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 0.0000000001 | 107 | 381 | 76 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 0.0000000001 | 107 | 381 | 76 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1rmg_A | 0.000005 | 26 | 372 | 19 | 346 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
Signal Peptide | |||||
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Cleavage Site | |||||
22 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CO114621 | 289 | 30 | 312 | 0 |
CO101156 | 288 | 31 | 312 | 0 |
CO101142 | 288 | 31 | 312 | 0 |
CO117610 | 286 | 30 | 309 | 0 |
CO114206 | 285 | 30 | 308 | 0 |
Orthologous Group | |||||
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Species | ID | ||||
Linum usitatissimum | Lus10003531 |
Sequence Alignments (This image is cropped. Click for full image.) |
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