Basic Information | |
---|---|
Species | Linum usitatissimum |
Cazyme ID | Lus10007242 |
Family | CBM22 |
Protein Properties | Length: 777 Molecular Weight: 86915.5 Isoelectric Point: 6.4409 |
Chromosome | Chromosome/Scaffold: 338 Start: 239544 End: 242321 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CBM22 | 62 | 198 | 1.7e-28 |
NIILNPRFEDGLKNWSAKGCRIELHESMSDGKIVPQMGKFFVSATQRTATWNGIEQEITGRVQREVPYAVTAVARIYGNNVTAATLQLTLWVQEQDLREQ YIAISSLQATDKDWMQLQGKFLLNSSPSRAIIFIEGP | |||
CBM22 | 233 | 375 | 4e-39 |
NVIENSNLEDGTSTSWFALGNCSLSVESGSPYILPPMAKDSLRSHDSLSGKYLRVTNRSQSWMGPAQIVTDKLRVYLTYQVSAWVRIGPGATGSQIVNAA LGVGSDWINGGEVEVNDGNWHEIGGTFRLEKQPSNVMVYVQGP | |||
GH10 | 429 | 712 | 0 |
VKQTQNSFPLGSCITRTSLDNDKFVNFLLDNFNWVVFENEMKWSWTEPQQGKFNYKEADDMLEFCRTHNLKVRGHCIFWEVESRIQSWVRSLNETSLMNA VQNRLNDLLPRYKGKLNHYDVNNEMLHGSFYQDRLGYDIRADMFRTAHQLDPSATLFVNDYHIEDGSDVHSTPEMYTRQVLDLREQGAEIGGIGVQGHIE VPVGTIVSSAFDKLGTLGLPIWVTELDVSSVNEFIRADDLEVMLREAFAHPAVEGVVLWGFWELYMSRKNAHLVDASGEINQAG |
Full Sequence |
---|
Protein Sequence Length: 777 Download |
MAKHLAFSAS IAILLMFPCL LPNLTLAASY VDGRSILGPY SRHHHQHQAN HAGVDAAVND 60 DNIILNPRFE DGLKNWSAKG CRIELHESMS DGKIVPQMGK FFVSATQRTA TWNGIEQEIT 120 GRVQREVPYA VTAVARIYGN NVTAATLQLT LWVQEQDLRE QYIAISSLQA TDKDWMQLQG 180 KFLLNSSPSR AIIFIEGPPA GTDILINSLI VQHAPKMPSS PRPVFQDPAF SMNVIENSNL 240 EDGTSTSWFA LGNCSLSVES GSPYILPPMA KDSLRSHDSL SGKYLRVTNR SQSWMGPAQI 300 VTDKLRVYLT YQVSAWVRIG PGATGSQIVN AALGVGSDWI NGGEVEVNDG NWHEIGGTFR 360 LEKQPSNVMV YVQGPASGVD LMVAGLQIFA VNREARYSYL KKQTDKIRKR DVVLKFPAAG 420 LNNISYIKVK QTQNSFPLGS CITRTSLDND KFVNFLLDNF NWVVFENEMK WSWTEPQQGK 480 FNYKEADDML EFCRTHNLKV RGHCIFWEVE SRIQSWVRSL NETSLMNAVQ NRLNDLLPRY 540 KGKLNHYDVN NEMLHGSFYQ DRLGYDIRAD MFRTAHQLDP SATLFVNDYH IEDGSDVHST 600 PEMYTRQVLD LREQGAEIGG IGVQGHIEVP VGTIVSSAFD KLGTLGLPIW VTELDVSSVN 660 EFIRADDLEV MLREAFAHPA VEGVVLWGFW ELYMSRKNAH LVDASGEINQ AGKRFLSLKK 720 EWLSEAKGSI DGKGEFRFRG FHGTYDIQIE SSTTQTTNKT FVVDKGHSPL VVPIDL* 780 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 4.0e-13 | 62 | 202 | 143 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 9.0e-15 | 233 | 378 | 154 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 2.0e-41 | 460 | 689 | 251 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
smart00633 | Glyco_10 | 4.0e-77 | 469 | 715 | 268 | + Glycosyl hydrolase family 10. | ||
pfam00331 | Glyco_hydro_10 | 5.0e-78 | 434 | 719 | 306 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002283550.1 | 0 | 56 | 776 | 261 | 981 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301133.1 | 0 | 48 | 776 | 321 | 1049 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 9e-34 | 59 | 441 | 161 | 526 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 61 | 388 | 1 | 314 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002510024.1 | 0 | 57 | 776 | 108 | 827 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1i1x_A | 4e-32 | 438 | 688 | 18 | 268 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
PDB | 1i1w_A | 4e-32 | 438 | 688 | 18 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 1e-31 | 438 | 688 | 18 | 268 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
PDB | 1ta3_B | 1e-31 | 438 | 688 | 17 | 269 | B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With Inhibitor (Xip) |
PDB | 1k6a_A | 5e-31 | 438 | 688 | 18 | 268 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |