Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10020261 |
Family | CBM43 |
Protein Properties | Length: 484 Molecular Weight: 52907 Isoelectric Point: 4.6128 |
Chromosome | Chromosome/Scaffold: 641 Start: 119109 End: 121492 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 370 | 451 | 8.6e-25 |
WCVFNPNAKDLSKLADNINYACTFSDCTALGYGSSCNGLDANGNASYAFNMYYQVQNQDDLACNFEGLATVTTQNISQNNCN | |||
GH17 | 21 | 341 | 0 |
LGVNWGTMASHKLDPKAVVKLLEDNGIQKVKLFDADANTMNALAGSSLEVMVAIPNDQLQSMTRYGNAQDWVKRNISRYVFNGGVNIKYVAVGNEPFLKT YNGTFESITFPALQNIQNALNEANFGNIKATVPLNADVYFSPDDQPYPSAGRFRPDINDLMTAMVQFMVRNKAPFTVNIYPFLSLYGNDDFPFNYAFFDG VTQPVVDRGSGIQYTNVFDANFDTLVSALKAAGFGDMTIIVGEVGWPTDGDKNGNIGNAYRFYNGLMPRLAANKGTPLRPGFIEVYLFGLLDEDAKSIAP GSFERHWGIFRYDGQPKFALD |
Full Sequence |
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Protein Sequence Length: 484 Download |
MGRISIWAMV LLWILSAVDG LGVNWGTMAS HKLDPKAVVK LLEDNGIQKV KLFDADANTM 60 NALAGSSLEV MVAIPNDQLQ SMTRYGNAQD WVKRNISRYV FNGGVNIKYV AVGNEPFLKT 120 YNGTFESITF PALQNIQNAL NEANFGNIKA TVPLNADVYF SPDDQPYPSA GRFRPDINDL 180 MTAMVQFMVR NKAPFTVNIY PFLSLYGNDD FPFNYAFFDG VTQPVVDRGS GIQYTNVFDA 240 NFDTLVSALK AAGFGDMTII VGEVGWPTDG DKNGNIGNAY RFYNGLMPRL AANKGTPLRP 300 GFIEVYLFGL LDEDAKSIAP GSFERHWGIF RYDGQPKFAL DLSDSSIISG QGQNRFLVGA 360 KGVDYLPAKW CVFNPNAKDL SKLADNINYA CTFSDCTALG YGSSCNGLDA NGNASYAFNM 420 YYQVQNQDDL ACNFEGLATV TTQNISQNNC NFIIQIETAS VPSMRIGLVL LVVSLLVSSL 480 ALV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 3.0e-5 | 249 | 333 | 89 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 6.0e-19 | 369 | 439 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 5.0e-32 | 369 | 452 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 7.0e-69 | 21 | 341 | 325 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ90287.1 | 0 | 18 | 477 | 25 | 479 | beta-1,3-glucanase, acidic [Coffea arabica] |
RefSeq | XP_002277003.1 | 0 | 7 | 457 | 10 | 454 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002319699.1 | 0 | 16 | 456 | 18 | 453 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002325410.1 | 0 | 16 | 456 | 18 | 481 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525445.1 | 0 | 16 | 466 | 18 | 461 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 0 | 21 | 343 | 3 | 315 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
PDB | 3ur8_A | 0 | 21 | 343 | 3 | 315 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
PDB | 3ur7_B | 0 | 21 | 343 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 21 | 343 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 4gzj_A | 1.4013e-45 | 21 | 343 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |