Basic Information | |
---|---|
Species | Picea abies |
Cazyme ID | MA_159090g0120 |
Family | CE4 |
Protein Properties | Length: 348 Molecular Weight: 38452.1 Isoelectric Point: 9.5025 |
View CDS |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CE4 | 83 | 291 | 4.5e-27 |
AALARRFVCLTFDGGHRDFMTYAYPVLSRHRVPFALYIPTGFVDGIGKAWWLALEQVIARHARIGLVMNRTERHFFAASFADKYQLYAVLHAWMMTLSPD DLAIAIGDLCGRYGVDINEVSRDIAMNWQDLAKLARDPQATIGSATVNYPNLARTKGTSASREMSMGRTVLETALGGPCLHFAYPFGGQDCFGPREIMLA REAGFTTAV |
Full Sequence |
---|
Protein Sequence Length: 348 Download |
MLADVGLELG YFSGMARALE RRTGGSGAIL KFEHVRPRRD DPFQPLRSHD ITPEFLDKAI 60 SALKQWGFDF LSIGEVAERA QQAALARRFV CLTFDGGHRD FMTYAYPVLS RHRVPFALYI 120 PTGFVDGIGK AWWLALEQVI ARHARIGLVM NRTERHFFAA SFADKYQLYA VLHAWMMTLS 180 PDDLAIAIGD LCGRYGVDIN EVSRDIAMNW QDLAKLARDP QATIGSATVN YPNLARTKGT 240 SASREMSMGR TVLETALGGP CLHFAYPFGG QDCFGPREIM LAREAGFTTA VSAGPGVIRS 300 DGRSDLMALP RIAWDGRRNS LRALRVVLSG ITIRKAKAHS PEPATNYG |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10973 | CE4_DAC_u4_5s | 7.0e-6 | 89 | 127 | 39 | + Putative catalytic NodB homology domain of uncharacterized bacterial polysaccharide deacetylases which consist of a 5-stranded beta/alpha barrel. This family contains many uncharacterized bacterial polysaccharide deacetylases. Although their biological functions remain unknown, all members of the family are predicted to contain a conserved domain with a 5-stranded beta/alpha barrel, which is similar to the catalytic NodB homology domain of rhizobial NodB-like proteins, belonging to the larger carbohydrate esterase 4 (CE4) superfamily. | ||
cd10973 | CE4_DAC_u4_5s | 6.0e-11 | 208 | 313 | 113 | + Putative catalytic NodB homology domain of uncharacterized bacterial polysaccharide deacetylases which consist of a 5-stranded beta/alpha barrel. This family contains many uncharacterized bacterial polysaccharide deacetylases. Although their biological functions remain unknown, all members of the family are predicted to contain a conserved domain with a 5-stranded beta/alpha barrel, which is similar to the catalytic NodB homology domain of rhizobial NodB-like proteins, belonging to the larger carbohydrate esterase 4 (CE4) superfamily. | ||
cd10918 | CE4_NodB_like_5s_6s | 2.0e-11 | 90 | 137 | 48 | + Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes bacterial poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, hemin storage system HmsF protein in gram-negative species, intercellular adhesion proteins IcaB, and many uncharacterized prokaryotic polysaccharide deacetylases. It also includes a putative polysaccharide deacetylase YxkH encoded by the Bacillus subtilis yxkH gene, which is one of six polysaccharide deacetylase gene homologs present in the Bacillus subtilis genome. Sequence comparison shows all family members contain a conserved domain similar to the catalytic NodB homology domain of rhizobial NodB-like proteins, which consists of a deformed (beta/alpha)8 barrel fold with 6 or 7 strands. However, in this family, most proteins have 5 strands and some have 6 strands. Moreover, long insertions are found in many family members, whose function remains unknown. | ||
cd10918 | CE4_NodB_like_5s_6s | 2.0e-17 | 208 | 312 | 105 | + Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes bacterial poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, hemin storage system HmsF protein in gram-negative species, intercellular adhesion proteins IcaB, and many uncharacterized prokaryotic polysaccharide deacetylases. It also includes a putative polysaccharide deacetylase YxkH encoded by the Bacillus subtilis yxkH gene, which is one of six polysaccharide deacetylase gene homologs present in the Bacillus subtilis genome. Sequence comparison shows all family members contain a conserved domain similar to the catalytic NodB homology domain of rhizobial NodB-like proteins, which consists of a deformed (beta/alpha)8 barrel fold with 6 or 7 strands. However, in this family, most proteins have 5 strands and some have 6 strands. Moreover, long insertions are found in many family members, whose function remains unknown. | ||
cd10968 | CE4_Mlr8448_like_5s | 8.0e-40 | 207 | 317 | 111 | + Putative catalytic NodB homology domain of Mesorhizobium loti Mlr8448 protein and its bacterial homologs. This family contains Mesorhizobium loti Mlr8448 protein and its bacterial homologs. Although their biochemical properties are yet to be determined, members in this subfamily contain a conserved domain with a 5-stranded beta/alpha barrel, which is similar to the catalytic NodB homology domain of rhizobial NodB-like proteins, belonging to the larger carbohydrate esterase 4 (CE4) superfamily. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_948097.1 | 0 | 7 | 331 | 12 | 335 | polysaccharide deacetylase [Rhodopseudomonas palustris CGA009] |
RefSeq | YP_001206203.1 | 0 | 7 | 348 | 13 | 353 | putative polysaccharide deacetylase [Bradyrhizobium sp. ORS278] |
RefSeq | YP_001240537.1 | 0 | 7 | 348 | 13 | 353 | putative polysaccharide deacetylase [Bradyrhizobium sp. BTAi1] |
RefSeq | YP_001992074.1 | 0 | 7 | 331 | 12 | 335 | polysaccharide deacetylase [Rhodopseudomonas palustris TIE-1] |
RefSeq | YP_486276.1 | 0 | 6 | 331 | 11 | 336 | polysaccharide deacetylase [Rhodopseudomonas palustris HaA2] |
Orthologous Group | |||||
---|---|---|---|---|---|
Species | ID | ||||
Picea abies | MA_159114g0080 | ||||
Ricinus communis | 31440.m000027 | 35579.m000020 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|