PlantCAZyme

Basic Information
Species	Picea abies
Cazyme ID	MA_20455g0010
Family	PL1
Protein Properties	Length: 517 Molecular Weight: 57386.1 Isoelectric Point: 6.9702
View CDS

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
PL1	248	423	0
ITFAHDMVITLKEPLWIGSNTTVDGRGANVSIREKGIVMSSVHNIILHNFQVGDVAESDTVHIYKGVTKVWVDHLTSFNGKLGLVTVIQGSTDVTISNSL LSNTNFNMLLGASDMDTVDHKLRVTVYRNWFKDSTQRMPHCRWGYCHVVNNVYSNWGYYAIGGRAHAKIYSESNVF

Full Sequence
Protein Sequence Length: 517 Download
MDCSFRSVVF LHFFMGFYLL LLHAVVVTAG DGDYPVGYNN SRTAENLMSE ISESLLRFED 60 FLRKASVLND TITSLSSGQC EQAVNAALTS MPWLHALVLN HSYSDAITQL GHFKDILSSC 120 SELNIVDSIG FSEAMLDFTH QASEDIEKAY RILEDLGDLR KRTEIFQQSG NKFDVIKARS 180 KCEADGSKCQ FSRCGAGKML AKCAVGFAGG VSGGAEGELY MVTSSEDNPR DSPPGTLRYA 240 LTKNPVWITF AHDMVITLKE PLWIGSNTTV DGRGANVSIR EKGIVMSSVH NIILHNFQVG 300 DVAESDTVHI YKGVTKVWVD HLTSFNGKLG LVTVIQGSTD VTISNSLLSN TNFNMLLGAS 360 DMDTVDHKLR VTVYRNWFKD STQRMPHCRW GYCHVVNNVY SNWGYYAIGG RAHAKIYSES 420 NVFFPGQKRL EITPWYTGSD STTFDTTPTI QSRNDLFLNG AIFHQFLRFG TLNPPRYAPA 480 TYYPPIIPTA KLAALVQDCS GALFGRRLRL CLHSARD

Full Sequence

Protein Sequence Length: 517 Download

MDCSFRSVVF LHFFMGFYLL LLHAVVVTAG DGDYPVGYNN SRTAENLMSE ISESLLRFED    60
FLRKASVLND TITSLSSGQC EQAVNAALTS MPWLHALVLN HSYSDAITQL GHFKDILSSC    120
SELNIVDSIG FSEAMLDFTH QASEDIEKAY RILEDLGDLR KRTEIFQQSG NKFDVIKARS    180
KCEADGSKCQ FSRCGAGKML AKCAVGFAGG VSGGAEGELY MVTSSEDNPR DSPPGTLRYA    240
LTKNPVWITF AHDMVITLKE PLWIGSNTTV DGRGANVSIR EKGIVMSSVH NIILHNFQVG    300
DVAESDTVHI YKGVTKVWVD HLTSFNGKLG LVTVIQGSTD VTISNSLLSN TNFNMLLGAS    360
DMDTVDHKLR VTVYRNWFKD STQRMPHCRW GYCHVVNNVY SNWGYYAIGG RAHAKIYSES    420
NVFFPGQKRL EITPWYTGSD STTFDTTPTI QSRNDLFLNG AIFHQFLRFG TLNPPRYAPA    480
TYYPPIIPTA KLAALVQDCS GALFGRRLRL CLHSARD 

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
COG3866	PelB	1.0e-29	238	444	228	+ Pectate lyase [Carbohydrate transport and metabolism]
pfam00544	Pec_lyase_C	1.0e-40	265	423	181	+ Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
smart00656	Amb_all	2.0e-51	253	423	187	+ Amb_all domain.

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
RefSeq	NP_200383.1	0	180	478	42	361	pectate lyase family protein [Arabidopsis thaliana]
RefSeq	XP_001753505.1	0	197	511	2	324	predicted protein [Physcomitrella patens subsp. patens]
RefSeq	XP_001761530.1	0	189	511	1	330	predicted protein [Physcomitrella patens subsp. patens]
RefSeq	XP_002282500.1	0	181	486	29	345	PREDICTED: hypothetical protein [Vitis vinifera]
RefSeq	XP_002522747.1	0	198	511	66	399	Pectate lyase precursor, putative [Ricinus communis]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	1pxz_B	0	200	463	21	309	A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen
PDB	1pxz_A	0	200	463	21	309	A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen
PDB	1vbl_A	0.000000000000006	262	423	128	330	A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47
PDB	3zsc_A	0.0000000000002	200	423	2	246	A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima
PDB	1jta_A	0.000000000002	207	423	44	287	A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima

Transmembrane Domains

Start	End
7	29

Signal Peptide

Cleavage Site
0

EST Download unfiltered results here

Hit	Length	Start	End	EValue
DC950609	218	298	511	0
BJ867600	215	287	501	0
BJ867266	182	286	467	0
JG594056	167	227	388	0
HO592271	143	326	466	0

Orthologous Group
Species	ID
Physcomitrella patens	Pp1s9_110V6.1
Selaginella moellendorffii	115361	92002	13606	13694

CAZyme Information