| Basic Information | |
|---|---|
| Species | Picea abies |
| Cazyme ID | MA_463685g0010 |
| Family | GH28 |
| Protein Properties | Length: 222 Molecular Weight: 23300.2 Isoelectric Point: 6.2395 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 94 | 186 | 1.1e-31 |
| VQVEGVKIKAPADSINTDGIHLQSSNVLIRDTVVRTGDDCVSIGGGSSNIAIEGFTCGPGHGISVGSLGKGSVFEVVSNISVNGAIFNGTQNG | |||
| Full Sequence |
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| Protein Sequence Length: 222 Download |
| MLLGEQQVFN VQQFGAVAKY KTDNSKAFLA AWTAACSSTQ PSVFYVPNGK FWLDPVSFEG 60 PCKSDNIMVQ ITGDLIAPRS NHAWSSSSDV NYWVQVEGVK IKAPADSINT DGIHLQSSNV 120 LIRDTVVRTG DDCVSIGGGS SNIAIEGFTC GPGHGISVGS LGKGSVFEVV SNISVNGAIF 180 NGTQNGGFGG NDVKISNVVF KNIIGTSSSE TAIIMACSKR VP |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 0.0002 | 36 | 112 | 77 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 2.0e-12 | 6 | 100 | 96 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-26 | 94 | 222 | 172 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 8.0e-27 | 94 | 222 | 136 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 1.0e-29 | 7 | 175 | 230 | + polygalacturonase | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB10216.1 | 6e-39 | 2 | 222 | 29 | 351 | polygalacturonase-like protein [Arabidopsis thaliana] |
| EMBL | CBI15274.1 | 6e-37 | 5 | 222 | 22 | 338 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_198807.1 | 9.80909e-45 | 2 | 222 | 29 | 313 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002267133.1 | 3e-36 | 5 | 222 | 22 | 347 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002321662.1 | 3e-36 | 7 | 222 | 24 | 305 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.0000001 | 101 | 203 | 192 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1kcd_A | 0.0000003 | 109 | 177 | 151 | 215 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1kcc_A | 0.0000003 | 109 | 177 | 151 | 215 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1k5c_A | 0.0000003 | 109 | 177 | 151 | 215 | A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution |
| PDB | 1rmg_A | 0.000001 | 4 | 205 | 16 | 271 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| CF452289 | 237 | 9 | 179 | 1e-33 |
| EX438627 | 247 | 8 | 178 | 6e-28 |
| EX370942 | 247 | 8 | 178 | 6e-28 |
| EX422323 | 247 | 8 | 178 | 8e-28 |
| DV987134 | 247 | 8 | 178 | 1e-27 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Picea abies | MA_219076g0010 | MA_8561980g0010 | |||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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