| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00036753m |
| Family | CE8 |
| Protein Properties | Length: 388 Molecular Weight: 41537.7 Isoelectric Point: 4.8401 |
| Chromosome | Chromosome/Scaffold: 000619 Start: 3 End: 1417 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CE8 | 246 | 388 | 0 |
| NVTVAADGSGDVNTIKEALDRVPPKNAAMYVVYVKAGTYKEYVSVGRPQTNVAFIGDGADKTIITGNKNFKMNLTTKDTATMEAIGNGFFMKGVRVENTA GAENHQAVALRVQSDQAVFYQCTFDGYQDTLYTHAQRQFFRDC | |||
| Full Sequence |
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| Protein Sequence Length: 388 Download |
| MSKGAIIGAS TVLVVAVVAA VCVVSFKGNS SKGEGEGDGN LSMSVKSVKA FCQPTDYQQT 60 CEAELSKAAG NATSPTDLAK AIFAVTSDKI HKAISESATL NELKNDKRTS GALQNCKELL 120 EYAIDDLKAT FDKLGGFEMT NFKKAIDDLK TWLSAALTYQ DTCLDGFANA TTTEASAKMQ 180 NALNASQELT EDILAVVDQF SDTLGGLSVG RRLLGEDGMP SWMPAEGGSR RLLEEASPSS 240 PDFKPNVTVA ADGSGDVNTI KEALDRVPPK NAAMYVVYVK AGTYKEYVSV GRPQTNVAFI 300 GDGADKTIIT GNKNFKMNLT TKDTATMEAI GNGFFMKGVR VENTAGAENH QAVALRVQSD 360 QAVFYQCTFD GYQDTLYTHA QRQFFRDC |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02468 | PLN02468 | 8.0e-80 | 27 | 388 | 368 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02990 | PLN02990 | 1.0e-84 | 27 | 388 | 378 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN02745 | PLN02745 | 3.0e-88 | 46 | 388 | 359 | + Putative pectinesterase/pectinesterase inhibitor | ||
| PLN02314 | PLN02314 | 1.0e-89 | 47 | 388 | 357 | + pectinesterase | ||
| PLN02217 | PLN02217 | 4.0e-106 | 31 | 388 | 361 | + probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAZ05229.1 | 0 | 41 | 388 | 38 | 387 | hypothetical protein OsI_27427 [Oryza sativa Indica Group] |
| GenBank | EAZ41174.1 | 0 | 41 | 388 | 38 | 387 | hypothetical protein OsJ_25671 [Oryza sativa Japonica Group] |
| RefSeq | NP_001060715.1 | 0 | 41 | 388 | 38 | 387 | Os07g0691100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001151322.1 | 0 | 27 | 388 | 27 | 387 | pectinesterase-1 [Zea mays] |
| RefSeq | XP_002461260.1 | 0 | 27 | 388 | 27 | 391 | hypothetical protein SORBIDRAFT_02g043780 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 4.99997e-41 | 245 | 388 | 7 | 150 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 2e-36 | 246 | 387 | 4 | 145 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 0.000004 | 246 | 388 | 32 | 195 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 1qjv_B | 0.0006 | 249 | 388 | 7 | 168 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 0.0006 | 249 | 388 | 7 | 168 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Transmembrane Domains | |||||
|---|---|---|---|---|---|
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| Start | End | ||||
| 4 | 26 | ||||
| Signal Peptide | |||||
|---|---|---|---|---|---|
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| Cleavage Site | |||||
| 20 | |||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| FL780666 | 266 | 25 | 290 | 0 |
| FL761675 | 230 | 93 | 322 | 0 |
| FL771335 | 230 | 61 | 290 | 0 |
| FL761675 | 27 | 322 | 348 | 0.000005 |
| FL771335 | 27 | 29 | 55 | 0.0002 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Glycine max | Glyma0248s00200.1 | ||||
| Panicum virgatum | Pavirv00067617m | ||||
| Phaseolus vulgaris | Phvul.005G103500.1.187.314 | Phvul.005G103500.1.187.314 | |||
| Zea mays | AC212451.4_FGT009 | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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