| Basic Information | |
|---|---|
| Species | Phaseolus vulgaris |
| Cazyme ID | Phvul.007G253100.1 |
| Family | GH28 |
| Protein Properties | Length: 254 Molecular Weight: 27229.7 Isoelectric Point: 5.7396 |
| Chromosome | Chromosome/Scaffold: 07 Start: 49153504 End: 49154957 |
| Description | polygalacturonase abscission zone A. thaliana |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 79 | 242 | 0 |
| GDDCISIESGSRNVQATKITCGPGHGISIGSLGSGESKDFVSGVTVNGAKFSGTTNGVRIKTWQGGSGSASNIKFQNIQMEKVTNPIVIDQNYCDQATPC KKQKSAVQIKNVLYENIKGTSGSDVGVQFDCSEKFPCEGIVLQNIDLQYEDRREAKASCNSVQL | |||
| Full Sequence |
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| Protein Sequence Length: 254 Download |
| MALPRHPLLF LFAMIMLSFA DSTVAEDPLL LFHEGSAKDN NFIVQSTNVL NLKSFDKLGQ 60 ISSSPKMVNV NDYGAQGDGD DCISIESGSR NVQATKITCG PGHGISIGSL GSGESKDFVS 120 GVTVNGAKFS GTTNGVRIKT WQGGSGSASN IKFQNIQMEK VTNPIVIDQN YCDQATPCKK 180 QKSAVQIKNV LYENIKGTSG SDVGVQFDCS EKFPCEGIVL QNIDLQYEDR REAKASCNSV 240 QLSYRGDVNP QCP* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 6.0e-45 | 77 | 253 | 181 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 5.0e-50 | 79 | 250 | 172 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-52 | 77 | 240 | 164 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 2.0e-62 | 77 | 252 | 176 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL30418.1 | 0.0000000008 | 1 | 107 | 1 | 97 | AF434714_1 dehiscence-related endopolygalaturonase [Glycine max] |
| GenBank | AAL30418.1 | 0 | 77 | 253 | 252 | 428 | AF434714_1 dehiscence-related endopolygalaturonase [Glycine max] |
| RefSeq | XP_002308956.1 | 0 | 77 | 253 | 267 | 443 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002322711.1 | 0 | 77 | 252 | 277 | 452 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 0.000000000000005 | 80 | 226 | 175 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000000000005 | 80 | 226 | 175 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.000000000000005 | 80 | 226 | 175 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.000000000000005 | 80 | 226 | 175 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 0.000000000000005 | 80 | 226 | 175 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Signal Peptide | ||||
|---|---|---|---|---|
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| Cleavage Site | ||||
| 25 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| CK318807 | 178 | 77 | 254 | 0 |
| DV152812 | 175 | 79 | 253 | 0 |
| BU888780 | 178 | 77 | 254 | 0 |
| DN486268 | 178 | 77 | 254 | 0 |
| DN495824 | 178 | 77 | 254 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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