Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si000630m |
Family | CBM22 |
Protein Properties | Length: 645 Molecular Weight: 70982.2 Isoelectric Point: 5.965 |
Chromosome | Chromosome/Scaffold: 5 Start: 7887308 End: 7889974 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 92 | 241 | 4.2e-30 |
NLIENSALEDGLAGWAPVGSCTALSVHEEEPAKVPTETINDVAEDYRPSGRYILASGRADETDGLRQAIKGALKPRVTYRVSGWISLGGGAATTAEEGAG GHAVCVNLRLDDECVVKGGAVCAEVGRWTEIKGAFRLKKSPCAAAVYVQG | |||
GH10 | 297 | 586 | 0 |
VFQMDSSFPFGACINPSVIQNPAFVDFFTKHFDWAVFENELKWYHTEAQQGQLNYADSDALLDFCDQHGKPVRGHCIFWAVENTVQQWVKNLDDDQLKSA VQERLQSLLTRYAGRFPHYDVNNEMLHGSYYRSRLGDDIDAFMFRETARLDPGATLFVNDYNVEGGSDPNATPEKYIEQIAALQQKGAAVGGIGLQGHVT NPVGEVICDALDKLSAATDLPVWLTELDVCESDVDLRAEDLEVVLREAYAHPAVEGVVFWGFMQGHMWRQDACLVNSDGTVNDAGERFVD |
Full Sequence |
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Protein Sequence Length: 645 Download |
MPVCGGCFEF ARRLGVRCAL QPFRGDPDER PIGPLYKVSR RGPWPSQPNR QRTSFPTKLA 60 LISDHLLGFF PSILPLIQCA MACTQEVVFD VNLIENSALE DGLAGWAPVG SCTALSVHEE 120 EPAKVPTETI NDVAEDYRPS GRYILASGRA DETDGLRQAI KGALKPRVTY RVSGWISLGG 180 GAATTAEEGA GGHAVCVNLR LDDECVVKGG AVCAEVGRWT EIKGAFRLKK SPCAAAVYVQ 240 GAPAGVDVKV MDLQVYATDR RARFRKLRRK TDKVRKRDVV LNFGSAASGI SGASVRVFQM 300 DSSFPFGACI NPSVIQNPAF VDFFTKHFDW AVFENELKWY HTEAQQGQLN YADSDALLDF 360 CDQHGKPVRG HCIFWAVENT VQQWVKNLDD DQLKSAVQER LQSLLTRYAG RFPHYDVNNE 420 MLHGSYYRSR LGDDIDAFMF RETARLDPGA TLFVNDYNVE GGSDPNATPE KYIEQIAALQ 480 QKGAAVGGIG LQGHVTNPVG EVICDALDKL SAATDLPVWL TELDVCESDV DLRAEDLEVV 540 LREAYAHPAV EGVVFWGFMQ GHMWRQDACL VNSDGTVNDA GERFVDLRRE WTSHARGHID 600 SAGHFKFRGY HGSYVVQLAT ATGKVHKTFS VEKGDTPLVL DMNL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 2.0e-6 | 91 | 244 | 155 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 6.0e-35 | 326 | 566 | 264 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 3.0e-76 | 302 | 586 | 306 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 7.0e-77 | 337 | 584 | 270 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN28310.1 | 0 | 81 | 644 | 1 | 565 | unknown [Zea mays] |
GenBank | EAY72426.1 | 0 | 81 | 644 | 1 | 557 | hypothetical protein OsI_00280 [Oryza sativa Indica Group] |
RefSeq | NP_001041947.1 | 0 | 81 | 644 | 1 | 557 | Os01g0134900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001147907.1 | 0 | 81 | 644 | 1 | 566 | LOC100281517 [Zea mays] |
RefSeq | XP_002455241.1 | 0 | 81 | 644 | 1 | 564 | hypothetical protein SORBIDRAFT_03g006950 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1tux_A | 1e-29 | 334 | 578 | 46 | 289 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1i1x_A | 2e-29 | 334 | 578 | 46 | 289 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1i1w_A | 2e-29 | 334 | 578 | 46 | 289 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1xyz_B | 2e-29 | 290 | 564 | 23 | 313 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 2e-29 | 290 | 564 | 23 | 313 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GT807565 | 234 | 412 | 645 | 0 |
FL860597 | 241 | 357 | 595 | 0 |
CB647597 | 268 | 193 | 458 | 0 |
FL826196 | 193 | 295 | 487 | 0 |
FL826196 | 58 | 482 | 539 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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