Basic Information | |
---|---|
Species | Setaria italica |
Cazyme ID | Si013645m |
Family | CBM43 |
Protein Properties | Length: 489 Molecular Weight: 51471.1 Isoelectric Point: 5.2397 |
Chromosome | Chromosome/Scaffold: 6 Start: 1592772 End: 1597639 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CBM43 | 369 | 450 | 6.6e-27 |
WCVLKPAADLADQKVGDSVSYACGLADCTALGYKTSCGGLDARGNVSYAFNSYYQTMDQDDRACDFRGLATTTSVDPSTGTC | |||
GH17 | 29 | 346 | 0 |
IGVNWGTQLSHPLPASTVVRLLQDNGFDKVKLFDAEDAILGALKGSGIQVMVGIPNDMLADLAAGGKAAEDWVARNVSGHVRDGVDIRYVAVGNEPFLET FNGTYLNTTFPAMQNIQSALMKAGLADKVKVTVPLNADVYQSSTGKPSDGDFRADIHGLMLTIVQFLASTGAPFVANVYPFISLYSDPNFPLDYAFFQGS SSPVADGGVTYQNTFDANHDTLVAALRRNGYGNVSIVVGEVGWPTDGSANANLDYARRFNQGFLDHIAGGRGTPLRPGPVDAYLFSLVDEDRKSIQPGNF ERHWGIFNYDGTPKYPLS |
Full Sequence |
---|
Protein Sequence Length: 489 Download |
MAAAAAGAGR AVAVALLLVV VSLRRSEAIG VNWGTQLSHP LPASTVVRLL QDNGFDKVKL 60 FDAEDAILGA LKGSGIQVMV GIPNDMLADL AAGGKAAEDW VARNVSGHVR DGVDIRYVAV 120 GNEPFLETFN GTYLNTTFPA MQNIQSALMK AGLADKVKVT VPLNADVYQS STGKPSDGDF 180 RADIHGLMLT IVQFLASTGA PFVANVYPFI SLYSDPNFPL DYAFFQGSSS PVADGGVTYQ 240 NTFDANHDTL VAALRRNGYG NVSIVVGEVG WPTDGSANAN LDYARRFNQG FLDHIAGGRG 300 TPLRPGPVDA YLFSLVDEDR KSIQPGNFER HWGIFNYDGT PKYPLSLAGG NSGSTLKPAR 360 GVRYLEKRWC VLKPAADLAD QKVGDSVSYA CGLADCTALG YKTSCGGLDA RGNVSYAFNS 420 YYQTMDQDDR ACDFRGLATT TSVDPSTGTC RFIVEIDVGA AAAISAARGV AAGAASVLAA 480 IALMSMLL* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 2.0e-5 | 260 | 338 | 83 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 1.0e-17 | 368 | 439 | 79 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-31 | 369 | 452 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-86 | 29 | 346 | 320 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ06041.1 | 0 | 1 | 456 | 1 | 460 | hypothetical protein OsI_28283 [Oryza sativa Indica Group] |
RefSeq | NP_001045844.1 | 0 | 27 | 461 | 30 | 461 | Os02g0139300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001061277.1 | 0 | 1 | 456 | 1 | 460 | Os08g0224500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001151032.1 | 0 | 32 | 461 | 36 | 465 | glucan endo-1,3-beta-glucosidase 6 [Zea mays] |
RefSeq | XP_002445228.1 | 0 | 24 | 463 | 29 | 468 | hypothetical protein SORBIDRAFT_07g006340 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghr_A | 0 | 29 | 347 | 1 | 306 | A Chain A, Structural Basis Of Phosphopeptide Recognition By The Brct Domain Of Brca1: Structure Of Brca1 Missense Variant V18 |
PDB | 1aq0_B | 0 | 29 | 347 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 0 | 29 | 347 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 2cyg_A | 0 | 29 | 347 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 0 | 29 | 348 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |