Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si029637m |
Family | CBM43 |
Protein Properties | Length: 492 Molecular Weight: 52593 Isoelectric Point: 5.7408 |
Chromosome | Chromosome/Scaffold: 2 Start: 23187999 End: 23190662 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 367 | 446 | 3.1e-27 |
WCVANPARNLDSVSDHMKLACSMADCTTLYYGGSCYGIGQKGNVSYAFNSYYQQQKQDPKSCDFDGLGMITYLDPSMGEC | |||
GH17 | 27 | 346 | 0 |
IGVNWGTLSSHRAPPGVVVDLMRANRISKVKLFDADPGVLRALAGSGIQVMVGVTNGELASIAGSQAAADAWVAQNVSRYVGRGVVDIRYIAVGNEPFLT SYQGQFQSYIIPAMTNIQQSLVKANLASYVKQVVPCNADAYESASVPSQGVFRTELTQIMTQLAAFLSSSGAPFVVNIYPFLSLYQNSDFPQDYAFFEGS THPLVDGPNVYYNAFDGNFDTLVSALGKIGYGNLPIAIGEIGWPTEGAPSANLTAARAFNQGLINRITSSKGTPLRPGVPPADVYLFSLLDEEQKSILPG NFERHWGIFSFDGQAKYPLN |
Full Sequence |
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Protein Sequence Length: 492 Download |
MAVRGATLLA AILLVALCAG LPADAAIGVN WGTLSSHRAP PGVVVDLMRA NRISKVKLFD 60 ADPGVLRALA GSGIQVMVGV TNGELASIAG SQAAADAWVA QNVSRYVGRG VVDIRYIAVG 120 NEPFLTSYQG QFQSYIIPAM TNIQQSLVKA NLASYVKQVV PCNADAYESA SVPSQGVFRT 180 ELTQIMTQLA AFLSSSGAPF VVNIYPFLSL YQNSDFPQDY AFFEGSTHPL VDGPNVYYNA 240 FDGNFDTLVS ALGKIGYGNL PIAIGEIGWP TEGAPSANLT AARAFNQGLI NRITSSKGTP 300 LRPGVPPADV YLFSLLDEEQ KSILPGNFER HWGIFSFDGQ AKYPLNLGLG NSVLKNAKEV 360 PYLPSRWCVA NPARNLDSVS DHMKLACSMA DCTTLYYGGS CYGIGQKGNV SYAFNSYYQQ 420 QKQDPKSCDF DGLGMITYLD PSMGECRFLV GVDDSKSSAV ASCGSGYCGF CCGLWVLAFW 480 VFMYLRLMGS A* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 7.0e-5 | 171 | 338 | 179 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 5.0e-18 | 366 | 435 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-31 | 367 | 448 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-74 | 27 | 346 | 321 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ06546.1 | 0 | 27 | 464 | 36 | 473 | hypothetical protein OsI_28792 [Oryza sativa Indica Group] |
GenBank | EEC84224.1 | 0 | 22 | 490 | 20 | 487 | hypothetical protein OsI_30642 [Oryza sativa Indica Group] |
RefSeq | NP_001062739.1 | 0 | 24 | 490 | 22 | 487 | Os09g0272300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001141759.1 | 0 | 23 | 491 | 24 | 492 | hypothetical protein LOC100273895 [Zea mays] |
RefSeq | XP_002459936.1 | 0 | 23 | 491 | 24 | 492 | hypothetical protein SORBIDRAFT_02g017290 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 0 | 27 | 350 | 3 | 317 | A Chain A, Arabidopsis Thaliana Peroxidase N |
PDB | 3ur8_A | 0 | 27 | 350 | 3 | 317 | A Chain A, Arabidopsis Thaliana Peroxidase N |
PDB | 3ur7_B | 0 | 27 | 350 | 3 | 317 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 27 | 350 | 3 | 317 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 4gzj_A | 1.4013e-45 | 27 | 350 | 3 | 317 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |