| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si034912m |
| Family | CBM22 |
| Protein Properties | Length: 572 Molecular Weight: 63352.2 Isoelectric Point: 7.3732 |
| Chromosome | Chromosome/Scaffold: 9 Start: 53588851 End: 53593104 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM22 | 47 | 163 | 1.6e-22 |
| IIRNSDFSAGLQGWTAFGYGVVEEGASASGNRYAVARNRTRPYQSVSQKVYLQNDTHYTLSAWLQVSNGSADIRAVVKTNGDFIHAGGVEARSGCWSILK GGLTAAAAGPAELYFES | |||
| GH10 | 223 | 486 | 0 |
| RSGFPLGSAMSAEILQSPAYQQWFTSRFTVTTFENEMKWYSTERVQGREDYSVPDAMLRFAKSHGIAVRGHNIFWDQPSQQPGWVQSLSYPQLRQATAKR IKSVMSRYAGQVIAWDVVNENLHFSFFEGKFGWDASAAFYRKAHQMDGNALMSMNEFNTLEQPGDPNAVPGKYLGKLFQIKKFPGNTNDGRMAIGLEGHF STPNIPYIRAALDTMSKAGVPIWLTEIDVAPGPNQAANLEKILREVYSHPAVHGIILWTAWHQQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 572 Download |
| MGRALFLSLL WVAMLSASRV VQALPYDYSS TSECLPEPLE PHYGGGIIRN SDFSAGLQGW 60 TAFGYGVVEE GASASGNRYA VARNRTRPYQ SVSQKVYLQN DTHYTLSAWL QVSNGSADIR 120 AVVKTNGDFI HAGGVEARSG CWSILKGGLT AAAAGPAELY FESNATVEVW VDNVSLQPFS 180 QEEWAAHHHT AIKSARKKTV RLRARDSAGK PVPGAQVRIE HVRSGFPLGS AMSAEILQSP 240 AYQQWFTSRF TVTTFENEMK WYSTERVQGR EDYSVPDAML RFAKSHGIAV RGHNIFWDQP 300 SQQPGWVQSL SYPQLRQATA KRIKSVMSRY AGQVIAWDVV NENLHFSFFE GKFGWDASAA 360 FYRKAHQMDG NALMSMNEFN TLEQPGDPNA VPGKYLGKLF QIKKFPGNTN DGRMAIGLEG 420 HFSTPNIPYI RAALDTMSKA GVPIWLTEID VAPGPNQAAN LEKILREVYS HPAVHGIILW 480 TAWHQQGCYV MCLTDNNFRN LPTGDVVDKL IREWQTRSHA GVADADGYYE AELFHGDYEV 540 TVSHPAANST VVQSLSVDRK TDPNHVYPIH V* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 3.0e-8 | 45 | 163 | 129 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 3.0e-30 | 250 | 480 | 253 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 2.0e-50 | 226 | 480 | 276 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 6.0e-76 | 259 | 507 | 273 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF94510.1 | 0 | 4 | 571 | 7 | 579 | 1,4-beta-xylanase, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ACN31540.1 | 0 | 22 | 571 | 26 | 575 | unknown [Zea mays] |
| GenBank | EEE58525.1 | 0 | 4 | 571 | 7 | 579 | hypothetical protein OsJ_09814 [Oryza sativa Japonica Group] |
| GenBank | EEE58525.1 | 0 | 18 | 459 | 559 | 988 | hypothetical protein OsJ_09814 [Oryza sativa Japonica Group] |
| RefSeq | XP_002465685.1 | 0 | 1 | 571 | 9 | 584 | hypothetical protein SORBIDRAFT_01g043720 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 2e-31 | 228 | 507 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1e0v_A | 2e-24 | 223 | 480 | 11 | 266 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 1v0n_A | 3e-24 | 223 | 480 | 11 | 266 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 1v0m_A | 3e-24 | 223 | 480 | 11 | 266 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 1v0l_A | 3e-24 | 223 | 480 | 11 | 266 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
