Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si034995m |
Family | CBM22 |
Protein Properties | Length: 555 Molecular Weight: 60608.2 Isoelectric Point: 5.5937 |
Chromosome | Chromosome/Scaffold: 9 Start: 31875588 End: 31877395 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 10 | 155 | 8.5e-21 |
FEVNAVGWAPCGARTALSQHHDDPARLPTAAVGHGHKPSGRYVLAAARADEEDGLRQAITLGALRPRVTYRVAGWISVACEAAEEEDGNQQGGHPVRVSI RVGDDDGGCVIDGGAVCAEPGRWAEIKGAFRLRESPRSAAVHVHGP | |||
GH10 | 207 | 495 | 0 |
VQLDSGFPLGSCINGEVIQNPAFVDFFTNHLDWAVFENELKWYWTEAHRGQLNYGDADRLLDFCDRAGKPARGHCIFWAVDGDVQQWIKDIGGDRDQLMA VVQERIRGLLGRYAGRFPHYDVNNEMLHGRFFRDRLGDDVAALMFREAARLDPGAALFVNDYNVECGNDPNATPDKYIGLIRDLQRGGAQVGGIGLQGHV SNPVGEVICDALDKLSATDLPVWITELDVGEPDEALRADDLEVVLREAYAHPSVQGVVLWGFMQGHMWRQDAALVNADGTVNDAGQRFI |
Full Sequence |
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Protein Sequence Length: 555 Download |
MASTHQDVVF EVNAVGWAPC GARTALSQHH DDPARLPTAA VGHGHKPSGR YVLAAARADE 60 EDGLRQAITL GALRPRVTYR VAGWISVACE AAEEEDGNQQ GGHPVRVSIR VGDDDGGCVI 120 DGGAVCAEPG RWAEIKGAFR LRESPRSAAV HVHGPPAGVD VKVMDLRIIA IDRKARFSYL 180 KDKTDKVRKR DVVLKLGGAA GASVRVVQLD SGFPLGSCIN GEVIQNPAFV DFFTNHLDWA 240 VFENELKWYW TEAHRGQLNY GDADRLLDFC DRAGKPARGH CIFWAVDGDV QQWIKDIGGD 300 RDQLMAVVQE RIRGLLGRYA GRFPHYDVNN EMLHGRFFRD RLGDDVAALM FREAARLDPG 360 AALFVNDYNV ECGNDPNATP DKYIGLIRDL QRGGAQVGGI GLQGHVSNPV GEVICDALDK 420 LSATDLPVWI TELDVGEPDE ALRADDLEVV LREAYAHPSV QGVVLWGFMQ GHMWRQDAAL 480 VNADGTVNDA GQRFIELRRE WTSDARGRLD GDGQFKFRGF HGSYVAQVTT ATGKMLKAFT 540 VDKGDAALVL DMDI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 6.0e-30 | 243 | 476 | 252 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 5.0e-66 | 213 | 496 | 302 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 7.0e-68 | 246 | 494 | 268 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN28310.1 | 0 | 1 | 554 | 1 | 565 | unknown [Zea mays] |
GenBank | EAY72426.1 | 0 | 1 | 554 | 1 | 557 | hypothetical protein OsI_00280 [Oryza sativa Indica Group] |
RefSeq | NP_001041947.1 | 0 | 1 | 554 | 1 | 557 | Os01g0134900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001055187.1 | 0 | 16 | 554 | 30 | 581 | Os05g0319900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002455241.1 | 0 | 1 | 554 | 1 | 564 | hypothetical protein SORBIDRAFT_03g006950 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xyz_B | 2e-29 | 200 | 474 | 24 | 313 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 2e-29 | 200 | 474 | 24 | 313 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1x_A | 6e-29 | 243 | 488 | 46 | 289 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1w_A | 6e-29 | 243 | 488 | 46 | 289 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1tux_A | 7e-29 | 243 | 488 | 46 | 289 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL860597 | 241 | 266 | 505 | 0 |
GT807565 | 233 | 323 | 555 | 0 |
FL874412 | 263 | 197 | 459 | 0 |
HO149443 | 229 | 202 | 430 | 0 |
HO159988 | 227 | 202 | 428 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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