Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si038956m |
Family | CBM22 |
Protein Properties | Length: 750 Molecular Weight: 82156.9 Isoelectric Point: 5.1795 |
Chromosome | Chromosome/Scaffold: 9 Start: 9154380 End: 9156715 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 20 | 160 | 9.1e-32 |
NIILNPEFEDGLDNWTGNGCKIELHDSLDDGKVLPANGKYFVAATGRTDTWNGVQQDVTARMQRKLLYEATATVRLHAAAGGGGVAACEVRATLGVQTAD GRQQYLSVGKAQVSDKEWVQLQGKILLNSTVAKASIYIEGP | |||
CBM22 | 195 | 341 | 3.5e-40 |
NIIQNCNLDDGLNGWFPLGPCTLSVHDGAPRVVPPMAKESLALDDDEPLNGKHIHVTNRTQTWMGPAQIITDKLTLYATYQVSAWVRVGALPAGASPQNI NVAVAVDSQWLNGGQVMARDERWYEVGGAFRVEAKPATRVMIYVQGP | |||
GH10 | 406 | 689 | 0 |
VSNSFPLGACIMRTNMDNEDFVDFFTKNFNWAVFGNELKWYWTEPQRGQVSYADADDLLRLCSDHGMCVRGHCIFWEVENTVQQWVKTLSTDDLSAAVKS RLDGLLTRYKGKFKHYDVNNEMLHGSFYQDKLGKDIRATMFKTAAELDPDALLFVNDYNVESMCDIRATPEAYIQQIIELQEQGAPVGGVGLQGHVSNPV GPVIRSVLDRLAVLGLPIWFTEVDVSSANEHVRADDLEVMLREAYAHPAVEGVMLWGFWELFMSRDDAHLVDAEGQVNEAGRRL |
Full Sequence |
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Protein Sequence Length: 750 Download |
MAIGSDPAGL VLGDGAGDDN IILNPEFEDG LDNWTGNGCK IELHDSLDDG KVLPANGKYF 60 VAATGRTDTW NGVQQDVTAR MQRKLLYEAT ATVRLHAAAG GGGVAACEVR ATLGVQTADG 120 RQQYLSVGKA QVSDKEWVQL QGKILLNSTV AKASIYIEGP QAGVDVLLDS LVVKHAQKAP 180 PAPAPDFENL EYGANIIQNC NLDDGLNGWF PLGPCTLSVH DGAPRVVPPM AKESLALDDD 240 EPLNGKHIHV TNRTQTWMGP AQIITDKLTL YATYQVSAWV RVGALPAGAS PQNINVAVAV 300 DSQWLNGGQV MARDERWYEV GGAFRVEAKP ATRVMIYVQG PDAGVDLMVA GLQVFPVDRK 360 VRVKHLKRLT DKVRKRDVVL KVTGADSGGA VKDAAGGGVE VRVRQVSNSF PLGACIMRTN 420 MDNEDFVDFF TKNFNWAVFG NELKWYWTEP QRGQVSYADA DDLLRLCSDH GMCVRGHCIF 480 WEVENTVQQW VKTLSTDDLS AAVKSRLDGL LTRYKGKFKH YDVNNEMLHG SFYQDKLGKD 540 IRATMFKTAA ELDPDALLFV NDYNVESMCD IRATPEAYIQ QIIELQEQGA PVGGVGLQGH 600 VSNPVGPVIR SVLDRLAVLG LPIWFTEVDV SSANEHVRAD DLEVMLREAY AHPAVEGVML 660 WGFWELFMSR DDAHLVDAEG QVNEAGRRLL QLKREWLTHA HGHADDNGEF KFRGHHGEYH 720 VDVTTPTGKI SQTFTVDKDD APLVLNIKV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 5.0e-13 | 194 | 343 | 157 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 3.0e-18 | 20 | 162 | 144 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 3.0e-31 | 441 | 663 | 243 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 2.0e-78 | 407 | 693 | 307 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 2.0e-81 | 443 | 689 | 268 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY91350.1 | 0 | 1 | 749 | 1 | 756 | hypothetical protein OsI_12971 [Oryza sativa Indica Group] |
RefSeq | NP_001050876.1 | 0 | 1 | 749 | 1 | 756 | Os03g0672900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002283550.1 | 0 | 16 | 747 | 263 | 979 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002283550.1 | 9e-33 | 18 | 354 | 92 | 416 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002466685.1 | 0 | 4 | 749 | 6 | 748 | hypothetical protein SORBIDRAFT_01g012210 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xyz_B | 2e-33 | 387 | 663 | 24 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 2e-33 | 387 | 663 | 24 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1nq6_A | 4e-28 | 412 | 684 | 15 | 291 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1i1x_A | 8e-28 | 433 | 662 | 39 | 268 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1i1w_A | 8e-28 | 433 | 662 | 39 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EX570690 | 295 | 456 | 750 | 0 |
EL428755 | 280 | 410 | 689 | 0 |
EX570691 | 281 | 456 | 736 | 0 |
HO789518 | 279 | 449 | 727 | 0 |
GR184067 | 268 | 412 | 679 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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