| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10006631m |
| Family | CBM53 |
| Protein Properties | Length: 1097 Molecular Weight: 124579 Isoelectric Point: 6.6939 |
| Chromosome | Chromosome/Scaffold: 5 Start: 11623904 End: 11629523 |
| Description | starch synthase 3 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM53 | 209 | 292 | 1.5e-30 |
| EDIEVFFNRNLSTLNYEPDILIMGAFNDWRWKSFTRRLEKTWIHGDWWSCLLHIPKEAYKMDFVFFNGQSVYDNNDSKDFCVDV | |||
| CBM53 | 384 | 477 | 1.4e-31 |
| DKVKLYYNKSSGPLANSKEIWLHGGFNNWADGLSIVEKLVDAELKVNPKSGDWWFTEVIVPDGALVIDWVFADGPPNGAVLYDNNSHQDFHALV | |||
| CBM53 | 549 | 638 | 2e-32 |
| GSPVTVFYNPSNTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMEAADDGSSHMKTSAKVPLDAYMMDFVFSEREDGGIFDNRNGLDYHLPV | |||
| GT5 | 649 | 1092 | 0 |
| HVVHIAVEMAPIAKVGGLGDVVTSLSRAVQELNHNVDIIFPKYDCLKHNFVKDLQFNRSYHWGGTEIKVWHGKVEGLSVYFLDPQNGLFQRGCVYGCADD AGRFGFFCHAALEFLLQGGLHPDILHCHDWSSAPVSWLFKDHYTHYGLIKTRVVFTIHNLEFGANAIGKAMTFADRATTVSPTYAKEVAGNAVISPHLYK FHGIINGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEELQNRLGLKIADLPFVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFV NLANQLHSSHGDRARLVLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGAVPVVRKTGGLYDTVFDVDHDKERAQAQVLEPNGFSFDGADAPGV DYALNRAISAWYDGREWFNSLCKTVMEQDWSWNRPALEYLELYH | |||
| Full Sequence |
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| Protein Sequence Length: 1097 Download |
| MEVCWQIQRP ASLRPVFQEK GRLKINTSTG FLPRPKSCSF STIASLENQY NSNGFLHQIT 60 ASADFSRKKQ GRMAAPGPKS SSPRGFGRRT TVGSSQKRAQ KKNGEKDSNA TSTVTNEVLG 120 VTKLPEAKVD VQKQDSVASG ERNVLDRSES EDGIDRLDKK ATKDDALLEQ KLKVEREYLR 180 RQEIEALAEE SLARGDRMFV HPLTVKPDED IEVFFNRNLS TLNYEPDILI MGAFNDWRWK 240 SFTRRLEKTW IHGDWWSCLL HIPKEAYKMD FVFFNGQSVY DNNDSKDFCV DVKGGMDKVE 300 FENFLLEEKW REQEKLAKEE AERERQEEEK RRVEARKAAI EADRAQAKAE TQKRREMLQP 360 ALQKAVISAE NVWYIGPSDL KVEDKVKLYY NKSSGPLANS KEIWLHGGFN NWADGLSIVE 420 KLVDAELKVN PKSGDWWFTE VIVPDGALVI DWVFADGPPN GAVLYDNNSH QDFHALVPRR 480 TPEETYWLEE ENLMFKKLQE ERRLKEEAIR VKMEKTARLK AEAKERTLKK FLLSQKDVVY 540 TEPLEIQAGS PVTVFYNPSN TVLNGKPEVW FRGSFNRWTH RLGPLPPQKM EAADDGSSHM 600 KTSAKVPLDA YMMDFVFSER EDGGIFDNRN GLDYHLPVVG GIAKEPPLHV VHIAVEMAPI 660 AKVGGLGDVV TSLSRAVQEL NHNVDIIFPK YDCLKHNFVK DLQFNRSYHW GGTEIKVWHG 720 KVEGLSVYFL DPQNGLFQRG CVYGCADDAG RFGFFCHAAL EFLLQGGLHP DILHCHDWSS 780 APVSWLFKDH YTHYGLIKTR VVFTIHNLEF GANAIGKAMT FADRATTVSP TYAKEVAGNA 840 VISPHLYKFH GIINGIDPDI WDPYNDNFIP VPYTSENVVE GKRAAKEELQ NRLGLKIADL 900 PFVGIITRLT HQKGIHLIKH AIWRTLERNG QVVLLGSAPD PRIQNDFVNL ANQLHSSHGD 960 RARLVLTYDE PLSHLIYAGA DFILVPSIFE PCGLTQLIAM RYGAVPVVRK TGGLYDTVFD 1020 VDHDKERAQA QVLEPNGFSF DGADAPGVDY ALNRAISAWY DGREWFNSLC KTVMEQDWSW 1080 NRPALEYLEL YHSARK* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02939 | PLN02939 | 2.0e-144 | 648 | 1094 | 493 | + transferase, transferring glycosyl groups | ||
| TIGR02095 | glgA | 3.0e-159 | 648 | 1094 | 490 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 6.0e-171 | 648 | 1096 | 488 | + glycogen synthase; Provisional | ||
| PLN02316 | PLN02316 | 0 | 73 | 1096 | 1041 | + synthase/transferase | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 649 | 1093 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| GO:2001070 | starch binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABB46391.1 | 0 | 73 | 1096 | 1 | 1025 | soluble starch synthase III [Arabidopsis thaliana] |
| EMBL | CAA64173.1 | 0 | 95 | 1096 | 206 | 1228 | soluble-starch-synthase [Solanum tuberosum] |
| RefSeq | NP_172637.1 | 0 | 73 | 1096 | 1 | 1025 | ATSS3 (starch synthase 3); starch synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002305571.1 | 0 | 73 | 1096 | 1 | 1017 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002518476.1 | 0 | 73 | 1096 | 1 | 1058 | starch synthase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 648 | 1092 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 648 | 1092 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 648 | 1092 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 648 | 1092 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 648 | 1092 | 1 | 474 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO778003 | 729 | 155 | 883 | 0 |
| HO794758 | 572 | 526 | 1096 | 0 |
| HO651392 | 413 | 685 | 1097 | 0 |
| HO794758 | 130 | 173 | 298 | 0.0008 |
| HO794758 | 114 | 366 | 477 | 0.32 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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