| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_023257m |
| Family | GH28 |
| Protein Properties | Length: 163 Molecular Weight: 18223.9 Isoelectric Point: 6.4852 |
| Chromosome | Chromosome/Scaffold: 09460 Start: 601737 End: 603380 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 10 | 120 | 1.8e-25 |
| PVKFQRVTNAVVSDIISINSKFFYFHITNCINFTANNLNIVAPDDTFNTDGMHISDTNGVKLTNNTFEIGDDCIFISVDSLGKEVNEAYVKGITMSNCTL FNTINSVRIKP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 163 Download |
| MNEFLNMMQP VKFQRVTNAV VSDIISINSK FFYFHITNCI NFTANNLNIV APDDTFNTDG 60 MHISDTNGVK LTNNTFEIGD DCIFISVDSL GKEVNEAYVK GITMSNCTLF NTINSVRIKP 120 SRVKISNIYC KNVKKTSTSD IAINFLCNLF VPCKEIELVN IN* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-15 | 13 | 162 | 211 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 4.0e-17 | 8 | 161 | 217 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 1.0e-18 | 13 | 153 | 169 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-27 | 11 | 162 | 213 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 7.0e-31 | 11 | 162 | 216 | + polygalacturonase/glycoside hydrolase family protein | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002269648.1 | 7e-31 | 11 | 162 | 119 | 333 | PREDICTED: hypothetical protein, partial [Vitis vinifera] |
| RefSeq | XP_002301488.1 | 4e-38 | 3 | 162 | 101 | 320 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301489.1 | 1e-38 | 11 | 162 | 170 | 380 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002336609.1 | 3e-38 | 11 | 162 | 107 | 317 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002523118.1 | 2e-37 | 9 | 162 | 40 | 252 | Exopolygalacturonase clone GBGE184 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 0.005 | 57 | 143 | 152 | 259 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.005 | 57 | 143 | 152 | 259 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.005 | 57 | 143 | 152 | 259 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.005 | 57 | 143 | 152 | 259 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 0.005 | 57 | 143 | 152 | 259 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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