| Basic Information | |
|---|---|
| Species | Carica papaya |
| Cazyme ID | evm.model.supercontig_28.110 |
| Family | GH28 |
| Protein Properties | Length: 247 Molecular Weight: 27057.4 Isoelectric Point: 6.2525 |
| Chromosome | Chromosome/Scaffold: 28 Start: 1600262 End: 1602949 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 152 | 245 | 1.2e-22 |
| DCIAINTGSSRINITGHGIRVEEVQVQNCTLIGTQNGARIKTWQGGSGYARKISFNQINLVDTRNPIIIDQFYNPNLIFPEGSESGDGVKVSDM | |||
| Full Sequence |
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| Protein Sequence Length: 247 Download |
| MEELDGFLIG WCSCIPFDSS YVTSDVYNVV RYGAVGDGVT DDSHSFLRAW RDVCGAREGN 60 PTLDVPRGKT FMLNPITFLG PCNSKTIHIQ VRGNVVAPRR RWRTGDGLGA WISFSNINGL 120 TINGGGRIDG QGPVWWKYCN QNYETATLDV IDCIAINTGS SRINITGHGI RVEEVQVQNC 180 TLIGTQNGAR IKTWQGGSGY ARKISFNQIN LVDTRNPIII DQFYNPNLIF PEGSESGDGV 240 KVSDMT* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 5.0e-14 | 152 | 226 | 95 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 4.0e-21 | 18 | 187 | 170 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 8.0e-22 | 21 | 140 | 120 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03010 | PLN03010 | 7.0e-52 | 22 | 224 | 279 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 1.0e-52 | 21 | 225 | 287 | + Probable polygalacturonase At3g15720 | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA20037.1 | 0 | 27 | 224 | 14 | 287 | putative polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_001078162.1 | 0 | 17 | 225 | 13 | 298 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_197222.1 | 0 | 12 | 225 | 19 | 317 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002266797.1 | 0 | 24 | 246 | 15 | 308 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002515527.1 | 0 | 27 | 224 | 28 | 270 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 0.001 | 152 | 246 | 177 | 285 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.001 | 152 | 246 | 177 | 285 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.001 | 152 | 246 | 177 | 285 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 0.001 | 152 | 246 | 177 | 285 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 0.001 | 152 | 246 | 177 | 285 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Hydropathy |
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