Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna02649.1-v1.0-hybrid |
Family | CBM22 |
Protein Properties | Length: 939 Molecular Weight: 103805 Isoelectric Point: 6.5098 |
Chromosome | Chromosome/Scaffold: 2 Start: 18113218 End: 18117047 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 224 | 359 | 4.7e-33 |
IVLNPNFEDGLTNWTGRGCQVVLHDSMGDGKIVPQSGKVFAAATQRTQSWNGIQQDITGRVQRKLAYEATAVVRIFGNNVTSSDVRATLWVQSPNGREQY IGISNVQATDKDWAQLKGKFLLNGSPSKVVVYLEGP | |||
CBM22 | 56 | 191 | 8.1e-35 |
NIIVNHDFCGGLHSWHPNCCEGYVVSADSGHPQANSGGNYAVVTNRKECWQGLEQDITGRVSPGSTYLVSASVGVSGPLEGCVDVLATVKMECQGSETKY SLVGRSSVSNGKWEKLEGKFTLSTMPDKVVFYLEGP | |||
CBM22 | 394 | 535 | 1.20512e-43 |
NIIENSNLSNGTNGWFPLGNCTLSVGTGSPHILPPMARDSLGAHEPLSGRYILVTKRTQTWMGPAQMIGDKLKLFLTYQVSAWVRIGSGATGPQNVNIAL SVDNQWVNGGQAEVGDNRWHEIGGSFRIEKQPSKVMVYIQGP | |||
GH10 | 593 | 860 | 0 |
QSQSSFPFGTCISRTNIDNEDFVDFFVKNFNWSVFGNELKWYWTEPQKGNFNYKDADEMVDLCMSHSIDMRGHCIYWEVVDTVQQWIRSLSQNDLATAVQ NRVTDLLTRYKGKFKHYDVNNEMLHGSFYQDKLGKDIRANMFKMANQLDPSALLFVNDYHVEDGCDTRSAPEKYIEQILDLQQEGAPVGGIGIQGHIDSP VGPIVCSALDKLGILGLPIWFTELDVSSSNEYVRADDLEVMLREAFANPSVEGIVLWGFWELFMSREN |
Full Sequence |
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Protein Sequence Length: 939 Download |
MRRLLALCCN RFKHKQNQNH PQRSEGDMEN QKTENAADGT KSVNQDMVNS SIRGTNIIVN 60 HDFCGGLHSW HPNCCEGYVV SADSGHPQAN SGGNYAVVTN RKECWQGLEQ DITGRVSPGS 120 TYLVSASVGV SGPLEGCVDV LATVKMECQG SETKYSLVGR SSVSNGKWEK LEGKFTLSTM 180 PDKVVFYLEG PSPGIDLLIQ SVVITCSSPK ERRHGIAIAG DQDIVLNPNF EDGLTNWTGR 240 GCQVVLHDSM GDGKIVPQSG KVFAAATQRT QSWNGIQQDI TGRVQRKLAY EATAVVRIFG 300 NNVTSSDVRA TLWVQSPNGR EQYIGISNVQ ATDKDWAQLK GKFLLNGSPS KVVVYLEGPP 360 AGTDILVNSF VVKHAEKAPP SSPPDIENPA FGVNIIENSN LSNGTNGWFP LGNCTLSVGT 420 GSPHILPPMA RDSLGAHEPL SGRYILVTKR TQTWMGPAQM IGDKLKLFLT YQVSAWVRIG 480 SGATGPQNVN IALSVDNQWV NGGQAEVGDN RWHEIGGSFR IEKQPSKVMV YIQGPASGVD 540 LMVAGLQIFP VDRQARFRHL KRQTEKIRKR DVILKFSGLD SSSAFGSCVK IKQSQSSFPF 600 GTCISRTNID NEDFVDFFVK NFNWSVFGNE LKWYWTEPQK GNFNYKDADE MVDLCMSHSI 660 DMRGHCIYWE VVDTVQQWIR SLSQNDLATA VQNRVTDLLT RYKGKFKHYD VNNEMLHGSF 720 YQDKLGKDIR ANMFKMANQL DPSALLFVND YHVEDGCDTR SAPEKYIEQI LDLQQEGAPV 780 GGIGIQGHID SPVGPIVCSA LDKLGILGLP IWFTELDVSS SNEYVRADDL EVMLREAFAN 840 PSVEGIVLWG FWELFMSREN SHLVNAEGDI NEAGKRYLQL KQEWLSHAHG HIDEQGQFKF 900 RGFHGTYSIE IATVTKKVLK TFVVDKGDDS PFEVSIAL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 1.0e-16 | 223 | 363 | 143 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 1.0e-19 | 56 | 193 | 140 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 3.0e-33 | 576 | 851 | 298 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
smart00633 | Glyco_10 | 9.0e-77 | 631 | 876 | 267 | + Glycosyl hydrolase family 10. | ||
pfam00331 | Glyco_hydro_10 | 5.0e-77 | 596 | 876 | 301 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1i1x_A | 2e-29 | 600 | 850 | 18 | 268 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 1i1w_A | 2e-29 | 600 | 850 | 18 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1nq6_A | 4e-29 | 600 | 872 | 15 | 291 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 2bnj_A | 2e-28 | 600 | 850 | 18 | 268 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
PDB | 1xyz_B | 3e-28 | 586 | 851 | 25 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
Sequence Alignments (This image is cropped. Click for full image.) |
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