Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna10145.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 481 Molecular Weight: 51241.5 Isoelectric Point: 8.3671 |
Chromosome | Chromosome/Scaffold: 1 Start: 599104 End: 605788 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 139 | 467 | 0 |
WAKACASVKPPVIYVPAGRFLLRNAVFSGPCKNSRITFRIAGTLVAPSDYRVIGNAGNWLLFQHVNGVTISGGILDGQGTGLWACKNSGKSCPSGATTLS FSNSNNIVVKGLVSLNSQMFHIVVNGCHNVKMQGVKVSASGNSPNTDGIHVQMSSGVTILNSKISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGK DLKEAGVQNVTVKTVTFTNTQNGVRIKSWGRASTGFARNILFQHCVMNNVQNPVVVDQKYCPDNKGCPGEVSGVKISDVTYQDIHGTSATEVAVKFDCSS KYPCSRIRLENVKLTYKNEAALASCSNAG |
Full Sequence |
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Protein Sequence Length: 481 Download |
MYAYGAFLSV YMRNYIYILW GIDSWLVFGL FLAVVGNITP SDNVPKKEKS RMEAAALNEM 60 CVVLGGGMRA EEIKELWEEY ENNSSVEANL VKDFDKVEMI LQALEYEMAI AKAVTYSVTT 120 LGAKPDGKTD STKAFLSAWA KACASVKPPV IYVPAGRFLL RNAVFSGPCK NSRITFRIAG 180 TLVAPSDYRV IGNAGNWLLF QHVNGVTISG GILDGQGTGL WACKNSGKSC PSGATTLSFS 240 NSNNIVVKGL VSLNSQMFHI VVNGCHNVKM QGVKVSASGN SPNTDGIHVQ MSSGVTILNS 300 KISTGDDCVS IGPGTSNLWI ENVACGPGHG ISIGSLGKDL KEAGVQNVTV KTVTFTNTQN 360 GVRIKSWGRA STGFARNILF QHCVMNNVQN PVVVDQKYCP DNKGCPGEVS GVKISDVTYQ 420 DIHGTSATEV AVKFDCSSKY PCSRIRLENV KLTYKNEAAL ASCSNAGGTS AGTVQPTSCL 480 * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 1.0e-88 | 143 | 466 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 6.0e-94 | 107 | 476 | 380 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-95 | 118 | 480 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-103 | 115 | 479 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 1.0e-141 | 107 | 480 | 375 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-18 | 237 | 453 | 154 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 3e-17 | 143 | 463 | 45 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 3e-17 | 143 | 463 | 45 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1hg8_A | 0.000000000000003 | 137 | 453 | 9 | 332 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 2iq7_G | 0.000000000000003 | 142 | 465 | 17 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |