Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna16611.1-v1.0-hybrid |
Family | PL1 |
Protein Properties | Length: 463 Molecular Weight: 50871.6 Isoelectric Point: 8.5874 |
Chromosome | Chromosome/Scaffold: 6 Start: 416377 End: 419091 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 165 | 373 | 0 |
AVIQTEPLWIVFQRDMVIQLKQELIMNSYKTIDGRGANVHIANGACITIQNIKHIIIHGLHIHGCRPTGNALVRSTPSHFGWRGMADGDAVSIFGSRDVW IDHNSLSKCADGLVDVVMASTAVTISNNDLWHHNEVMLFGHSNSYKGDKVMQVTVAYNHFGEGLRQRMPHCRQGYCHVVNNDYSSGWGIYAIGGSANPTI NSEGNRFVA |
Full Sequence |
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Protein Sequence Length: 463 Download |
MGFDRAEGRG GIRGEFGSYK SQLLSVGHGM ELVMDLCDDA VQDMAILILR PCLFSTLFIA 60 ETRTAPTALD DPEEVASMVS IIIRNSTERK LMQLRGSPSS CVTGNAIDDC WRCDTNWLNN 120 RKRLAACAIG FGRNAIGGRD GQFYVVTDPS DNDAVNPRAG TIRHAVIQTE PLWIVFQRDM 180 VIQLKQELIM NSYKTIDGRG ANVHIANGAC ITIQNIKHII IHGLHIHGCR PTGNALVRST 240 PSHFGWRGMA DGDAVSIFGS RDVWIDHNSL SKCADGLVDV VMASTAVTIS NNDLWHHNEV 300 MLFGHSNSYK GDKVMQVTVA YNHFGEGLRQ RMPHCRQGYC HVVNNDYSSG WGIYAIGGSA 360 NPTINSEGNR FVADPKRYPY SNQVTKRTSG DKSEWKNWNW RSKGDLFLNG AYFVESGATG 420 ANSEAYAKAS SDVKAQKSSK VRAITSAAGA LVCRRNRMCT RK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-19 | 192 | 450 | 272 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 7.0e-55 | 185 | 371 | 210 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 6.0e-60 | 179 | 373 | 206 | + Amb_all domain. |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 105 | 419 | 2 | 315 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 105 | 419 | 2 | 315 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 0.000000000000001 | 174 | 373 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 0.0000000004 | 183 | 372 | 71 | 277 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1vbl_A | 0.0000000005 | 177 | 353 | 122 | 317 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
Sequence Alignments (This image is cropped. Click for full image.) |
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