Basic Information | |
---|---|
Species | Fragaria vesca |
Cazyme ID | mrna23429.1-v1.0-hybrid |
Family | PL1 |
Protein Properties | Length: 622 Molecular Weight: 68933.7 Isoelectric Point: 7.1561 |
Chromosome | Chromosome/Scaffold: 7 Start: 13667260 End: 13670844 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 130 | 337 | 0 |
AVIQTEPLWITFSSDMTIKLKAELIVNSFKTIDGRGHSVHVTGGGCITLQYVSNVIIHNIHVHHCKPAGNTNVASSPTHVGWRGKSDGDGISLFGARKVW IDHCSLSYCADGLIDAIMGSTGITISNNYFAHHDEVMLLGHDDKYLPDSGMQVTIAFNHFGEALVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSANPTIN SQGNRYTA |
Full Sequence |
---|
Protein Sequence Length: 622 Download |
MPPTTCILLI CLLSSLSSLT LASLNLNLTL PHQHVNPEAV AQEVQRRVNA SLSRREMLSL 60 HDQQCATGNP IDDCWRCSST NWADNRQQLA DCGIGFGADA MGGKGGQIYI VTDSSDRNAA 120 NPTPGTLRHA VIQTEPLWIT FSSDMTIKLK AELIVNSFKT IDGRGHSVHV TGGGCITLQY 180 VSNVIIHNIH VHHCKPAGNT NVASSPTHVG WRGKSDGDGI SLFGARKVWI DHCSLSYCAD 240 GLIDAIMGST GITISNNYFA HHDEVMLLGH DDKYLPDSGM QVTIAFNHFG EALVQRMPRC 300 RRGYIHVVNN DFTQWEMYAI GGSANPTINS QGNRYTAPIN QNAKEEHFLN CVKKDMIPCF 360 WSPTHNRRRV YTVHALPVGL SLVCMRIFLF VMGEWVWDTL SLLILGPHFV TRFLLAVWRL 420 INFNRVDSLW IWGDMWRVGV TRLLGDDVLL KNGTGTLNNV TKRVDTNEGD WDNWNWRTEG 480 DIMVNGAFFV PSGAGMSTQY AKASSIEPKS VGLIDRLTVT AGVFGDPSLT NGAEGVENRE 540 LRLLLWIMGF TVLPECQICP WCLVGGGGRR RGRPYSRVFF LCIGKKYVGP TTRWADILYE 600 LDNYPMFADL FGVSQVESLG D* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 8.0e-22 | 139 | 333 | 211 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-58 | 134 | 335 | 210 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-68 | 144 | 339 | 207 | + Amb_all domain. |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 69 | 345 | 2 | 278 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 69 | 345 | 2 | 278 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 9e-17 | 101 | 335 | 22 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |