Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna25737.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 429 Molecular Weight: 46324.6 Isoelectric Point: 6.122 |
Chromosome | Chromosome/Scaffold: 6 Start: 25290548 End: 25293647 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 70 | 406 | 0 |
STYASEGTTTLVIPAEKTFLLQPTTFSGSCNSGNGIRVEIMGKIVAPKNPDEWKECVESWLSFGNLSNLIINGTGEINGQGSPWWSNITTQASKVKCERP KALHFFNCSNLRLSGVTHVDSPKAHISINRSNNVTVSDIHILAPHDSPNTDGIDISVSTYVNIHDSKIATGDDCIAINNGSSFINITNIACGPGHGISVG SLGVNRSYQTAEQINVRNCSFNGTQNGARLKTWQGGSGYARKITFENITLTDAKHPIIIDQHYCNGKHDCPNSTQAVQVSDVTYSNIQGTSSSMEAIVFN CTQIPGCTNIVMKQINITSAIAYQNISASCINANGTC |
Full Sequence |
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Protein Sequence Length: 429 Download |
MEAVEADMET AMRDRAAQLK NPNPRERESE ERLRFGHGQT TFNVLDYGAA GDGERDDSKA 60 FLEAWNASCS TYASEGTTTL VIPAEKTFLL QPTTFSGSCN SGNGIRVEIM GKIVAPKNPD 120 EWKECVESWL SFGNLSNLII NGTGEINGQG SPWWSNITTQ ASKVKCERPK ALHFFNCSNL 180 RLSGVTHVDS PKAHISINRS NNVTVSDIHI LAPHDSPNTD GIDISVSTYV NIHDSKIATG 240 DDCIAINNGS SFINITNIAC GPGHGISVGS LGVNRSYQTA EQINVRNCSF NGTQNGARLK 300 TWQGGSGYAR KITFENITLT DAKHPIIIDQ HYCNGKHDCP NSTQAVQVSD VTYSNIQGTS 360 SSMEAIVFNC TQIPGCTNIV MKQINITSAI AYQNISASCI NANGTCSTTV PQVSCLKTNE 420 TMSFNLYT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 2.0e-88 | 79 | 408 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 5.0e-91 | 40 | 403 | 367 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-105 | 42 | 421 | 382 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 5.0e-116 | 40 | 422 | 390 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 1.0e-118 | 42 | 422 | 382 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 3e-26 | 57 | 387 | 7 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 3e-26 | 57 | 387 | 7 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 3e-26 | 57 | 387 | 7 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 3e-26 | 57 | 387 | 7 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 3e-26 | 57 | 387 | 7 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Sequence Alignments (This image is cropped. Click for full image.) |
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