Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna25949.1-v1.0-hybrid |
Family | PL1 |
Protein Properties | Length: 440 Molecular Weight: 49101.6 Isoelectric Point: 6.8503 |
Chromosome | Chromosome/Scaffold: 5 Start: 6827081 End: 6828655 |
Description | Pectate lyase family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 161 | 359 | 0 |
IIFEEDMKIELKQELMMASDKTIDGRGVNVHIQGGGQITLQYVRNIIISNIHVRDTIPKNGGMIRDSINHYGLRTESDGDGISLFGATNVWIDHVSASNC ADGLIDVIQASTAITISNSHFTDHNDVMLFGSSDSNSKDEIMQITLAFNHFGQGLVQRMPRCRFGFFHVVNNDYTHWIMYAIGGSSHPTILSQGNRYIA |
Full Sequence |
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Protein Sequence Length: 440 Download |
MALEADRKLK LVILCLLMSI AIPVLKANIG MFDDVWEQRQ KEAEQAAKAA YQHDPLKHVV 60 HLNKQVHKAM KGHNDTRRNL RHHVDGPCEA INPIDKCWRC DPNWHENRQK LADCALGFGH 120 GTTGGKGGKI YVVTDDTDED MVNPKEGTLR YAVTRPEPLW IIFEEDMKIE LKQELMMASD 180 KTIDGRGVNV HIQGGGQITL QYVRNIIISN IHVRDTIPKN GGMIRDSINH YGLRTESDGD 240 GISLFGATNV WIDHVSASNC ADGLIDVIQA STAITISNSH FTDHNDVMLF GSSDSNSKDE 300 IMQITLAFNH FGQGLVQRMP RCRFGFFHVV NNDYTHWIMY AIGGSSHPTI LSQGNRYIAP 360 ENEAAKEVCY RVNTDKSVWK NWNWQSDKDL FVNGATFTES GGPVHSIDTK DMIEAQAGTA 420 VTFLTRYAGP LKCRKGQGC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR03805 | beta_helix_1 | 0.003 | 193 | 279 | 97 | + parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown [Unknown function, General]. | ||
pfam04431 | Pec_lyase_N | 6.0e-8 | 28 | 80 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 9.0e-32 | 166 | 429 | 279 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-64 | 172 | 357 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-74 | 166 | 360 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 92 | 429 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 92 | 429 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 7e-24 | 111 | 348 | 2 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 9e-17 | 170 | 399 | 71 | 316 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1vbl_A | 0.000000000000003 | 175 | 357 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
Sequence Alignments (This image is cropped. Click for full image.) |
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