| Basic Information | |
|---|---|
| Species | Citrus sinensis |
| Cazyme ID | orange1.1g047599m |
| Family | GH28 |
| Protein Properties | Length: 166 Molecular Weight: 17597.4 Isoelectric Point: 6.7801 |
| Chromosome | Chromosome/Scaffold: 00049 Start: 454322 End: 455039 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 4 | 114 | 1.6e-24 |
| SITYITSRDSKNFHFNTFKINIQAPENSPHTDGIHIANSNNIQILNSEISTGDDCASMDPGSQNVNISSNVKIWPSNVESISIRSLGGTPNEKEAREITV QNCNLKGTSNG | |||
| Full Sequence |
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| Protein Sequence Length: 166 Download |
| MHGSITYITS RDSKNFHFNT FKINIQAPEN SPHTDGIHIA NSNNIQILNS EISTGDDCAS 60 MDPGSQNVNI SSNVKIWPSN VESISIRSLG GTPNEKEARE ITVQNCNLKG TSNGGTSSTK 120 VAVDLQCSKV KPRDKIELRD IDMACHGAGG GQAAVSNYSN VHGVA* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-14 | 23 | 131 | 119 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 1.0e-15 | 23 | 119 | 97 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 4.0e-17 | 4 | 119 | 124 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-22 | 2 | 114 | 121 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 8.0e-23 | 8 | 114 | 115 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN85300.1 | 3e-21 | 2 | 114 | 174 | 291 | exopolygalacturonase precursor [Oryza coarctata] |
| GenBank | EAZ37619.1 | 1e-20 | 4 | 114 | 167 | 282 | hypothetical protein OsJ_21954 [Oryza sativa Japonica Group] |
| RefSeq | XP_002273801.1 | 6e-23 | 3 | 122 | 160 | 284 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002437276.1 | 7e-22 | 4 | 114 | 164 | 279 | hypothetical protein SORBIDRAFT_10g024020 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.003 | 12 | 57 | 171 | 224 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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