PUL ID

PUL0036

PubMed

11429470, Microbiology (Reading). 2001 Jul;147(Pt 7):1937-1946. doi: 10.1099/00221287-147-7-1937.

Characterization method

Southern Blot,transposon mutagenesis

Genomic accession number

AJ243431

Nucelotide position range

1-26953

Substrate

emulsan

Loci

wzc-wzb-wza-ORFA-ORFB-ORFC-wzx-wzy-ORFD-ORFE-ORFF-ORFG-ORFH-ORFI-ORFJ-ORFK-gaIU-ugd-pgI-gaIE-pgm

Species

Acinetobacter venetianus/52133

Degradation or Biosynthesis

biosynthesis

Gene Name

Locus Tag

Protein ID

Gene Position

GenBank Contig Range

EC Number

mip - CAB57192.1 0 - 534 (-) AJ243431.1:1-535 -
wzc - CAB57193.1 710 - 2891 (-) AJ243431.1:711-2892 -
wzb - CAB57194.1 2910 - 3339 (-) AJ243431.1:2911-3340 -
wza - CAB57195.1 3344 - 4445 (-) AJ243431.1:3345-4446 -
weeA - CAB57196.1 5061 - 6192 (+) AJ243431.1:5062-6193 -
weeB - CAB57197.1 6224 - 7478 (+) AJ243431.1:6225-7479 -
weeC - CAB57198.1 7478 - 8033 (+) AJ243431.1:7479-8034 -
wzx - CAB57199.1 8038 - 9244 (+) AJ243431.1:8039-9245 -
wzy - CAB57200.1 9240 - 10551 (+) AJ243431.1:9241-10552 -
weeD - CAB57201.1 10551 - 11511 (+) AJ243431.1:10552-11512 -
weeE - CAB57202.1 11510 - 13649 (+) AJ243431.1:11511-13650 -
weeF - CAB57203.1 13645 - 15460 (+) AJ243431.1:13646-15461 -
weeG - CAB57204.1 15456 - 16668 (+) AJ243431.1:15457-16669 -
weeH - CAB57205.1 16669 - 17281 (+) AJ243431.1:16670-17282 -
weeI - CAB57206.1 17277 - 17928 (+) AJ243431.1:17278-17929 -
weeJ - CAB57207.1 17959 - 19135 (+) AJ243431.1:17960-19136 -
weeK - CAB57208.1 19272 - 21147 (+) AJ243431.1:19273-21148 -
galU - CAB57209.1 21160 - 22036 (+) AJ243431.1:21161-22037 -
ugd - CAB57210.1 22052 - 23303 (+) AJ243431.1:22053-23304 -
pgi - CAB57211.1 23305 - 24979 (+) AJ243431.1:23306-24980 -
galE - CAB57212.1 24971 - 25988 (+) AJ243431.1:24972-25989 -
pgm - CAB57213.1 26035 - 26953 (-) AJ243431.1:26036-26954 -

Cluster number

1

Gene name

Gene position

Gene type

Found by CGCFinder?

- 1 - 534 (-) CDS No
- 711 - 2891 (-) TC: gnl|TC-DB|Q45409|8.A.3.3.3 Yes
- 2911 - 3339 (-) other Yes
- 3345 - 4445 (-) TC: gnl|TC-DB|P0A930|1.B.18.3.1 Yes
- 5062 - 6192 (+) other Yes
- 6225 - 7478 (+) other Yes
- 7479 - 8033 (+) other Yes
- 8039 - 9244 (+) other Yes
- 9241 - 10551 (+) other Yes
- 10552 - 11511 (+) other Yes
- 11511 - 13649 (+) other Yes
- 13646 - 15460 (+) CAZyme: PL12|PL0 Yes
- 15457 - 16668 (+) CAZyme: GT4 Yes
- 16670 - 17281 (+) TC: gnl|TC-DB|H8E4X1|9.B.18.1.2 Yes
- 17278 - 17928 (+) other Yes
- 17960 - 19135 (+) STP: STP|Aminotran_1_2 Yes
- 19273 - 21147 (+) TC: gnl|TC-DB|Q6MMD5|9.B.18.2.1 Yes
- 21161 - 22036 (+) CDS No
- 22053 - 23303 (+) CDS No
- 23306 - 24979 (+) CDS No
- 24972 - 25988 (+) CDS No
- 26036 - 26953 (-) CDS No

PUL ID

PUL0036

PubMed

11429470, Microbiology (Reading). 2001 Jul;147(Pt 7):1937-1946. doi: 10.1099/00221287-147-7-1937.

Title

Analysis of the wee gene cluster responsible for the biosynthesis of the polymeric bioemulsifier from the oil-degrading strain Acinetobacter lwoffii RAG-1.

Author

Nakar D, Gutnick DL

Abstract

A cluster (27 kbp) of genes responsible for the biosynthesis of the amphipathic, polysaccharide bioemulsifier emulsan from the oil-degrading Acinetobacter lwoffii RAG-1 was isolated and characterized. The complete sequence of this cluster, termed wee, consisted of 20 ORFs. One set of 17 ORFs was transcribed in one direction, while a second set of three ORFs, 607 bp upstream of the first, was transcribed in the opposite direction. Mutations in either of the two regions caused defects in emulsan production, yielding specific activities of 5-14% of parental emulsifying activity. Putative functions could be assigned to proteins involved in production of nucleotide amino sugar precursors, transglycosylation, transacetylation, polymerization and transport. However, no JUMPstart or ops sequences, normally found associated with some polysaccharide biosynthetic gene clusters, were identified. Evidence is presented suggesting that the bioemulsifier may be a member of the group 1 or group 4 polysaccharides.