PUL ID |
PUL0057 |
PubMed |
29787897, Carbohydr Res. 2018 Jul 15;464:8-11. doi: 10.1016/j.carres.2018.05.001. Epub 2018 May 7. |
Characterization method |
NMR,sequence homology analysis |
Genomic accession number |
AB811624 |
Nucelotide position range |
1-11989 |
Substrate |
O-antigen |
Loci |
rmlB-rmlD-rmlA-fdtC-wzx-wegP-rmlC-wzy-wegQ-wegR |
Species |
Escherichia coli/562 |
Degradation or Biosynthesis |
biosynthesis |
Gene Name |
Locus Tag |
Protein ID |
Gene Position |
GenBank Contig Range |
EC Number |
galF | - | BAQ01002.1 | 0 - 793 (+) | AB811624.1:1-794 | - |
rmlB | - | BAQ01003.1 | 1165 - 2251 (+) | AB811624.1:1166-2252 | - |
rmlD | - | BAQ01004.1 | 2250 - 3150 (+) | AB811624.1:2251-3151 | - |
rmlA | - | BAQ01005.1 | 3208 - 4084 (+) | AB811624.1:3209-4085 | - |
- | - | BAQ01006.1 | 4098 - 4512 (+) | AB811624.1:4099-4513 | - |
- | - | BAQ01007.1 | 4498 - 4966 (+) | AB811624.1:4499-4967 | - |
- | - | BAQ01008.1 | 4958 - 6065 (+) | AB811624.1:4959-6066 | - |
wzx | - | BAQ01009.1 | 6064 - 7327 (+) | AB811624.1:6065-7328 | - |
- | - | BAQ01010.1 | 7343 - 8393 (+) | AB811624.1:7344-8394 | - |
rmlC | - | BAQ01011.1 | 8413 - 8971 (+) | AB811624.1:8414-8972 | - |
wzy | - | BAQ01012.1 | 9039 - 10002 (+) | AB811624.1:9040-10003 | - |
- | - | BAQ01013.1 | 9994 - 10882 (+) | AB811624.1:9995-10883 | - |
- | - | BAQ01014.1 | 10912 - 11989 (+) | AB811624.1:10913-11990 | - |
Cluster number |
0 | ||
Gene name |
Gene position |
Gene type |
Found by CGCFinder? |
- | 1 - 793 (+) | CDS | No |
- | 1166 - 2251 (+) | CDS | No |
- | 2251 - 3150 (+) | CDS | No |
- | 3209 - 4084 (+) | CDS | No |
- | 4099 - 4512 (+) | CDS | No |
- | 4499 - 4966 (+) | CDS | No |
- | 4959 - 6065 (+) | CDS | No |
- | 6065 - 7327 (+) | CAZyme: GT4 | No |
- | 7344 - 8393 (+) | CDS | No |
- | 8414 - 8971 (+) | CDS | No |
- | 9040 - 10002 (+) | CAZyme: GT4 | No |
- | 9995 - 10882 (+) | CDS | No |
- | 10913 - 11989 (+) | CDS | No |
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