Home Repository Download Help About Statistics Taxonomy Blastx
Links
PULDB
CAZy
dbCAN2
dbCAN-seq
run_dbcan
CAZypedia
PlantCAZyme
Cite: NAR/gkaa742 2020



PUL General Information

Literature Information

PUL ID

PUL0241

PubMed

24448980, J Ind Microbiol Biotechnol. 2014 Mar;41(3):601-6. doi: 10.1007/s10295-013-1395-y. Epub 2014 Jan 22.

Characterization method

fosmid library screen,sequence homology analysis

Genomic accession number

JX424622

Nucelotide position range

7409-20096

Substrate

cellulose

Loci

AGH14043.1-AGH14049.1

Species

Prevotella sp. Sc00033/1231729

Degradation or Biosynthesis

degradation

Gene Name

Locus Tag

Protein ID

Gene Position

GenBank Contig Range

EC Number

- - AGH14043.1 0 - 1365 (-) JX424622.1:7409-8774 -
- - AGH14044.1 1389 - 3132 (-) JX424622.1:8798-10541 -
- - AGH14045.1 3147 - 6321 (-) JX424622.1:10556-13730 -
- - AGH14046.1 6360 - 7494 (-) JX424622.1:13769-14903 -
- - AGH14047.1 7675 - 10453 (-) JX424622.1:15084-17862 -
- - AGH14048.1 10535 - 11447 (-) JX424622.1:17944-18856 -
- - AGH14049.1 11467 - 12688 (-) JX424622.1:18876-20097 -

Cluster number

1

Gene name

Gene position

Gene type

Found by CGCFinder?

- 1 - 1365 (-) CDS No
- 1390 - 3132 (-) CDS No
- 3148 - 6321 (-) TC: gnl|TC-DB|Q93TH9|1.B.14.6.2 Yes
- 6361 - 7494 (-) CAZyme: GH5|GH5_4 Yes
- 7676 - 10453 (-) TF: DBD-Pfam|HTH_AraC,DBD-Pfam|HTH_AraC,DBD-SUPERFAMILY|0036286,DBD-SUPERFAMILY|0035607 Yes
- 10536 - 11447 (-) CAZyme: GH36 Yes
- 11468 - 12688 (-) CDS No

PUL ID

PUL0241

PubMed

24448980, J Ind Microbiol Biotechnol. 2014 Mar;41(3):601-6. doi: 10.1007/s10295-013-1395-y. Epub 2014 Jan 22.

Title

Analysis of the bovine rumen microbiome reveals a diversity of Sus-like polysaccharide utilization loci from the bacterial phylum Bacteroidetes.

Author

Rosewarne CP, Pope PB, Cheung JL, Morrison M

Abstract

Several unique Sus-like polysaccharide utilization loci (PULs) were identified from bacteria resident in bovine rumen microbiomes through functional screening of a fosmid library. The loci were phylogenetically assigned to the genus Prevotella within the phylum Bacteroidetes. These findings were augmented by a bioinformatic re-evaluation of ruminal Prevotella genomes, revealing additional loci not previously reported in the literature. Analysis of Bacteroidales-affiliated genomes reconstructed from a bovine rumen metagenome in a previous study further expanded the diversity of Sus-like PULs resident in this microbiome. Our findings suggest that Sus-like systems represent an important mechanism for degradation of a range of plant-derived glycans in ruminants.