Because CGCFinder predicted no CGC for this PUL, the gene cluster depicted below contains dbCAN2 and CGC signature predictions for all genes in the PUL, instead of a predicted CGC.


PUL ID

PUL0288

PubMed

22975275, Carbohydr Res. 2012 Oct 1;360:19-24. doi: 10.1016/j.carres.2012.07.013. Epub 2012 Jul 27.

Characterization method

acid hydrolysis,NMR,mass spectrometry,sugar utilization assay

Genomic accession number

X77617.1

Nucelotide position range

226-7140

Substrate

capsule polysaccharide,heparosan

Loci

kfiABCD

Species

Escherichia coli/562

Degradation or Biosynthesis

biosynthesis

Gene Name

Locus Tag

Protein ID

Gene Position

GenBank Contig Range

EC Number

KfiD - CAA54708.1 226 - 1405 (-) X77617.1:452-1631 -
KfiC - CAA54709.1 1446 - 3009 (-) X77617.1:1672-3235 -
hypothetical ORF - CAA54710.1 3341 - 3614 (-) X77617.1:3567-3840 -
hypothetical ORF - CAA54707.1 3704 - 4007 (+) X77617.1:3930-4233 -
KfiA - CAA54711.1 6423 - 7140 (-) X77617.1:6649-7366 -

Cluster number

0

Gene name

Gene position

Gene type

Found by CGCFinder?

- 227 - 1405 (-) CDS No
- 1447 - 3009 (-) CAZyme: GT2|GT2_Glycos_transf_2 No
- 3342 - 3614 (-) CDS No
- 3705 - 4007 (+) CDS No
- 6424 - 7140 (-) CDS No

PUL ID

PUL0288

PubMed

22975275, Carbohydr Res. 2012 Oct 1;360:19-24. doi: 10.1016/j.carres.2012.07.013. Epub 2012 Jul 27.

Title

Production of intracellular heparosan and derived oligosaccharides by lyase expression in metabolically engineered E. coli K-12.

Author

Barreteau H, Richard E, Drouillard S, Samain E, Priem B

Abstract

The cluster of genes of capsular K5 heparosan is composed of three regions, involved in the synthesis and the exportation of the polysaccharide. The region 2 possesses all the necessary genes involved in the synthesis of heparosan, namely kfiA, encoding alpha-4-N-acetylglucosaminyltransferase, kfiD, encoding beta-3-glucuronyl transferase, kfiC, encoding UDP-glucose dehydrogenase (UDP-glucuronic acid synthesis), and kfiB encoding a protein of unknown function. The cloning and expression of kfiADCB into Escherichia coli K-12 were found to be sufficient for the production of heparosan, which accumulates in the cells due to a lack of the exporting system. The concentration of recombinant heparosan reached one gram per liter under fed-batch cultivation. The cytoplasmic localization of heparosan inside the bacteria allowed subsequent enzymatic modifications such as a partial degradation with K5 lyase when expressed intracellularly. Under these conditions, the production of DP 2-10 oligosaccharides occurred intracellularly, at a concentration similar to that of recombinant intracellular heparosan.