magnitude magnitudeUnassigned species taxid Number lineage all a 602 2 2 2 2 2 1 Thermus thermophilus 274 1 1 Thermus brockianus 56956 1 270 Thermus Thermus 188786 Thermaceae Thermaceae 68933 Thermales Thermales 188787 Deinococci Deinococci 1297 Deinococcus-Thermus Deinococcus-Thermus 1 1 1 1 1 1 Spiroplasma citri 2133 1 2132 Spiroplasma Spiroplasma 2131 Spiroplasmataceae Spiroplasmataceae 186328 Entomoplasmatales Entomoplasmatales 31969 Mollicutes Mollicutes 544448 Tenericutes Tenericutes 1 uncultured bacterium contig00059 1181542 1 1 uncultured bacterium Contig196 1393527 1 2 2 2 2 1 1 Leptotrichia buccalis 40542 1 32067 Leptotrichia Leptotrichia 1 1 Streptobacillus moniliformis 34105 1 34104 Streptobacillus Streptobacillus 1129771 Leptotrichiaceae Leptotrichiaceae 203491 Fusobacteriales Fusobacteriales 203490 Fusobacteriia Fusobacteriia 32066 Fusobacteria Fusobacteria 1 uncultured bacterium 35A20 1194347 1 1 gut metagenome 749906 1 1 termite gut metagenome 433724 1 52 52 4 4 4 3 Corynebacterium glutamicum 1718 3 1 Corynebacterium alkanolyticum 909925 1 1716 Corynebacterium Corynebacterium 1653 Corynebacteriaceae Corynebacteriaceae 85007 Corynebacteriales Corynebacteriales 2 2 2 2 Kribbella flavida 182640 2 182639 Kribbella Kribbella 85015 Nocardioidaceae Nocardioidaceae 85009 Propionibacteriales Propionibacteriales 40 40 40 13 Bifidobacterium longum 216816 13 9 Bifidobacterium breve 1685 9 3 Bifidobacterium adolescentis 1680 3 14 Bifidobacterium animalis 28025 14 1 Bifidobacterium bifidum 1681 1 1678 Bifidobacterium Bifidobacterium 31953 Bifidobacteriaceae Bifidobacteriaceae 85004 Bifidobacteriales Bifidobacteriales 1 1 1 1 Actinoplanes sp. SE50/110 134676 1 1865 Actinoplanes Actinoplanes 28056 Micromonosporaceae Micromonosporaceae 85008 Micromonosporales Micromonosporales 4 4 4 1 Streptomyces reticuli 1926 1 1 Streptomyces coelicolor 1902 1 1 Streptomyces thermoviolaceus 1952 1 1 Streptomyces griseus 1911 1 1883 Streptomyces Streptomyces 2062 Streptomycetaceae Streptomycetaceae 85011 Streptomycetales Streptomycetales 1 1 1 1 Clavibacter michiganensis 28447 1 1573 Clavibacter Clavibacter 85023 Microbacteriaceae Microbacteriaceae 85006 Micrococcales Micrococcales 201174 Actinobacteria Actinobacteria 201174 Actinobacteria Actinobacteria 135 8 1 1 1 1 Maricaulis maris 74318 1 74317 Maricaulis Maricaulis 69657 Hyphomonadaceae Hyphomonadaceae 204455 Rhodobacterales Rhodobacterales 2 2 2 2 Sphingomonas sp. 28214 2 13687 Sphingomonas Sphingomonas 41297 Sphingomonadaceae Sphingomonadaceae 204457 Sphingomonadales Sphingomonadales 2 2 1 1 Sinorhizobium meliloti 382 1 28105 Sinorhizobium Sinorhizobium 1 1 Agrobacterium fabrum 1176649 1 357 Agrobacterium Agrobacterium 82115 Rhizobiaceae Rhizobiaceae 356 Rhizobiales Rhizobiales 2 2 1 1 Acidiphilium rubrum 526 1 522 Acidiphilium Acidiphilium 1 1 Gluconacetobacter diazotrophicus 33996 1 89583 Gluconacetobacter Gluconacetobacter 433 Acetobacteraceae Acetobacteraceae 204441 Rhodospirillales Rhodospirillales 1 1 1 1 Caulobacter vibrioides 155892 1 75 Caulobacter Caulobacter 76892 Caulobacteraceae Caulobacteraceae 204458 Caulobacterales Caulobacterales 28211 Alphaproteobacteria Alphaproteobacteria 120 19 3 1 1 Azotobacter vinelandii 354 1 352 Azotobacter Azotobacter 2 1 Pseudomonas alkylphenolica 237609 1 1 Pseudomonas aeruginosa 287 1 286 Pseudomonas Pseudomonas 135621 Pseudomonadaceae Pseudomonadaceae 16 16 1 Acinetobacter venetianus 52133 1 15 Acinetobacter baumannii 470 15 469 Acinetobacter Acinetobacter 468 Moraxellaceae Moraxellaceae 72274 Pseudomonadales Pseudomonadales 20 9 9 1 Pseudoalteromonas haloplanktis 228 1 1 Pseudoalteromonas luteoviolacea 43657 1 2 Pseudoalteromonas atlantica 288 2 1 Pseudoalteromonas piscicida 43662 1 2 Pseudoalteromonas carrageenovora 227 2 1 Pseudoalteromonas sp. S9 55516 1 1 Pseudoalteromonas sp. 53249 1 53246 Pseudoalteromonas Pseudoalteromonas 267888 Pseudoalteromonadaceae Pseudoalteromonadaceae 9 8 2 Alteromonas sp. 76-1 2358187 2 6 Alteromonas macleodii 28108 6 226 Alteromonas Alteromonas 1 1 Paraglaciecola hydrolytica 1799789 1 1621534 Paraglaciecola Paraglaciecola 72275 Alteromonadaceae Alteromonadaceae 2 2 2 Colwellia echini 1982103 2 28228 Colwellia Colwellia 267889 Colwelliaceae Colwelliaceae 135622 Alteromonadales Alteromonadales 57 7 3 1 Yersinia rohdei 29485 1 1 Yersinia kristensenii 28152 1 1 Yersinia intermedia 631 1 629 Yersinia Yersinia 4 4 Serratia marcescens 615 4 613 Serratia Serratia 1903411 Yersiniaceae Yersiniaceae 6 1 1 Pectobacterium carotovorum 554 1 122277 Pectobacterium Pectobacterium 5 2 Dickeya chrysanthemi 556 2 3 Dickeya dadantii 204038 3 204037 Dickeya Dickeya 1903410 Pectobacteriaceae Pectobacteriaceae 1 1 1 Providencia alcalifaciens 126385 1 586 Providencia Providencia 1903414 Morganellaceae Morganellaceae 43 2 2 Klebsiella oxytoca 571 2 570 Klebsiella Klebsiella 38 32 Escherichia coli 562 32 6 Escherichia albertii 208962 6 561 Escherichia Escherichia 1 1 Franconibacter pulveris 435910 1 1649295 Franconibacter Franconibacter 2 2 Salmonella enterica 28901 2 590 Salmonella Salmonella 543 Enterobacteriaceae Enterobacteriaceae 91347 Enterobacterales Enterobacterales 10 10 8 1 Vibrio parahaemolyticus 670 1 3 Vibrio vulnificus 672 3 4 Vibrio cholerae 666 4 662 Vibrio Vibrio 1 1 Photobacterium profundum 74109 1 657 Photobacterium Photobacterium 1 1 Aliivibrio fischeri 668 1 511678 Aliivibrio Aliivibrio 641 Vibrionaceae Vibrionaceae 135623 Vibrionales Vibrionales 9 9 1 1 Stenotrophomonas maltophilia 40324 1 40323 Stenotrophomonas Stenotrophomonas 8 1 Xanthomonas euvesicatoria 456327 1 7 Xanthomonas campestris 339 7 338 Xanthomonas Xanthomonas 32033 Xanthomonadaceae Xanthomonadaceae 135614 Xanthomonadales Xanthomonadales 5 3 1 1 Saccharophagus degradans 86304 1 316625 Saccharophagus Saccharophagus 2 1 Cellvibrio japonicus 155077 1 1 Cellvibrio mixtus 39650 1 10 Cellvibrio Cellvibrio 1706371 Cellvibrionaceae Cellvibrionaceae 2 2 1 Microbulbifer sp. JAM-3301 1081041 1 1 Microbulbifer thermotolerans 252514 1 48073 Microbulbifer Microbulbifer 1706373 Microbulbiferaceae Microbulbiferaceae 1706369 Cellvibrionales Cellvibrionales 1236 Gammaproteobacteria Gammaproteobacteria 7 4 2 1 1 Ralstonia solanacearum 305 1 48736 Ralstonia Ralstonia 1 1 Cupriavidus necator 106590 1 106589 Cupriavidus Cupriavidus 119060 Burkholderiaceae Burkholderiaceae 2 2 2 Collimonas fungivorans 158899 2 202907 Collimonas Collimonas 75682 Oxalobacteraceae Oxalobacteraceae 80840 Burkholderiales Burkholderiales 3 3 3 3 Nitrosospira multiformis 1231 3 35798 Nitrosospira Nitrosospira 206379 Nitrosomonadaceae Nitrosomonadaceae 32003 Nitrosomonadales Nitrosomonadales 28216 Betaproteobacteria Betaproteobacteria 1224 Proteobacteria Proteobacteria 31 uncultured bacterium 77133 31 2 feces metagenome 1861841 2 242 189 189 1 1 1 Tannerella forsythia 28112 1 195950 Tannerella Tannerella 2005525 Tannerellaceae Tannerellaceae 1 1 1 Dysgonomonas gadei 156974 1 156973 Dysgonomonas Dysgonomonas 2005520 Dysgonamonadaceae Dysgonamonadaceae 9 9 1 Prevotella ruminicola 839 1 2 Prevotella bryantii 77095 2 1 Prevotella sp. Sc00044 1231730 1 1 Prevotella sp. Sc00033 1231729 1 1 Prevotella sp. Sc00028 1231728 1 1 Prevotella intermedia 28131 1 1 Prevotella sp. Sc00026 1231727 1 1 Prevotella sp. Sc00066 1231731 1 838 Prevotella Prevotella 171552 Prevotellaceae Prevotellaceae 178 178 29 Bacteroides ovatus 28116 29 1 Bacteroides massiliensis 204516 1 3 Bacteroides plebeius 310297 3 2 Bacteroides uniformis 820 2 67 Bacteroides thetaiotaomicron 818 67 1 Bacteroides eggerthii 28111 1 40 Bacteroides fragilis 817 40 2 Bacteroides vulgatus 821 2 6 Bacteroides xylanisolvens 371601 6 24 Bacteroides cellulosilyticus 246787 24 1 Bacteroides fluxus 626930 1 1 Bacteroides intestinalis 329854 1 1 Bacteroides sp. 1_1_30 457387 1 816 Bacteroides Bacteroides 815 Bacteroidaceae Bacteroidaceae 171549 Bacteroidales Bacteroidales 200643 Bacteroidia Bacteroidia 43 43 43 16 16 Flavobacterium johnsoniae 986 16 237 Flavobacterium Flavobacterium 2 2 Salegentibacter sp. Hel_I_6 1250278 2 143222 Salegentibacter Salegentibacter 1 1 Leeuwenhoekiella sp. MAR_2009_132 1392489 1 283735 Leeuwenhoekiella Leeuwenhoekiella 12 12 Zobellia galactanivorans 63186 12 112040 Zobellia Zobellia 3 3 Capnocytophaga canimorsus 28188 3 1016 Capnocytophaga Capnocytophaga 1 1 Polaribacter sp. Hel1_33_49 1336803 1 52959 Polaribacter Polaribacter 1 1 Cellulophaga lytica 979 1 104264 Cellulophaga Cellulophaga 7 4 Gramella flava 1486245 4 3 Gramella forsetii 411153 3 292691 Gramella Gramella 49546 Flavobacteriaceae Flavobacteriaceae 200644 Flavobacteriales Flavobacteriales 117743 Flavobacteriia Flavobacteriia 10 10 10 10 10 Chitinophaga pinensis 79329 10 79328 Chitinophaga Chitinophaga 563835 Chitinophagaceae Chitinophagaceae 1853229 Chitinophagales Chitinophagales 1853228 Chitinophagia Chitinophagia 976 Bacteroidetes Bacteroidetes 1 1 1 1 1 1 Coprothermobacter proteolyticus 35786 1 68335 Coprothermobacter Coprothermobacter 2138247 Coprothermobacteraceae Coprothermobacteraceae 2138246 Coprothermobacterales Coprothermobacterales 2138243 Coprothermobacteria Coprothermobacteria 2138240 Coprothermobacterota Coprothermobacterota 119 83 33 4 4 4 Paenibacillus sp. JDR-2 324057 4 44249 Paenibacillus Paenibacillus 186822 Paenibacillaceae Paenibacillaceae 1 1 1 Listeria innocua 1642 1 1637 Listeria Listeria 186820 Listeriaceae Listeriaceae 27 10 7 Geobacillus stearothermophilus 1422 7 1 Geobacillus kaustophilus 1462 1 2 Geobacillus thermodenitrificans 33940 2 129337 Geobacillus Geobacillus 16 11 Bacillus subtilis 1423 11 2 Bacillus coagulans 1398 2 3 Bacillus sp. N16-5 122631 3 1386 Bacillus Bacillus 1 1 Parageobacillus thermoglucosidasius 1426 1 1906945 Parageobacillus Parageobacillus 186817 Bacillaceae Bacillaceae 1 1 1 Staphylococcus epidermidis 1282 1 1279 Staphylococcus Staphylococcus 90964 Staphylococcaceae Staphylococcaceae 1385 Bacillales Bacillales 50 1 1 1 Leuconostoc gelidum 1244 1 1243 Leuconostoc Leuconostoc 81850 Leuconostocaceae Leuconostocaceae 3 3 1 Enterococcus faecalis 1351 1 2 Enterococcus faecium 1352 2 1350 Enterococcus Enterococcus 81852 Enterococcaceae Enterococcaceae 29 23 1 Streptococcus pyogenes 1314 1 1 Streptococcus suis 1307 1 4 Streptococcus mutans 1309 4 15 Streptococcus pneumoniae 1313 15 2 Streptococcus agalactiae 1311 2 1301 Streptococcus Streptococcus 6 6 Lactococcus lactis 1358 6 1357 Lactococcus Lactococcus 1300 Streptococcaceae Streptococcaceae 17 17 7 Lactobacillus rhamnosus 47715 7 3 Lactobacillus casei 1582 3 1 Lactobacillus plantarum 1590 1 4 Lactobacillus acidophilus 1579 4 1 Lactobacillus rossiae 231049 1 1 Lactobacillus paracasei 1597 1 1578 Lactobacillus Lactobacillus 33958 Lactobacillaceae Lactobacillaceae 186826 Lactobacillales Lactobacillales 91061 Bacilli Bacilli 36 28 1 1 1 Faecalibacterium prausnitzii 853 1 216851 Faecalibacterium Faecalibacterium 541000 Ruminococcaceae Ruminococcaceae 6 2 [Eubacterium] rectale 39491 2 1 1 [Ruminococcus] gnavus 33038 1 2316020 Mediterraneibacter Mediterraneibacter 3 1 Roseburia inulinivorans 360807 1 2 Roseburia intestinalis 166486 2 841 Roseburia Roseburia 186803 Lachnospiraceae Lachnospiraceae 8 8 1 Clostridium beijerinckii 1520 1 1 Clostridium perfringens 1502 1 5 Clostridium cellulovorans 1493 5 1 Clostridium acetobutylicum 1488 1 1485 Clostridium Clostridium 31979 Clostridiaceae Clostridiaceae 13 13 7 Ruminiclostridium cellulolyticum 1521 7 6 Ruminiclostridium papyrosolvens 29362 6 1508657 Ruminiclostridium Ruminiclostridium 2304686 Hungateiclostridiaceae Hungateiclostridiaceae 186802 Clostridiales Clostridiales 8 3 3 3 Caldanaerobius polysaccharolyticus 44256 3 862261 Caldanaerobius Caldanaerobius 186814 Thermoanaerobacteraceae Thermoanaerobacteraceae 5 4 2 Caldicellulosiruptor bescii 31899 2 1 Caldicellulosiruptor danielii 1387557 1 1 Caldicellulosiruptor sp. Rt8B.4 28238 1 44000 Caldicellulosiruptor Caldicellulosiruptor 1 1 Thermoanaerobacterium thermosulfurigenes 33950 1 28895 Thermoanaerobacterium Thermoanaerobacterium 543371 Thermoanaerobacterales Family III. Incertae Sedis Thermoanaerobacterales Family III. Incertae Sedis 68295 Thermoanaerobacterales Thermoanaerobacterales 186801 Clostridia Clostridia 1239 Firmicutes Firmicutes 5 2 2 1 1 1 Haloferax mediterranei 2252 1 2251 Haloferax Haloferax 1644056 Haloferacaceae Haloferacaceae 1 1 1 Halorubrum lacusprofundi 2247 1 56688 Halorubrum Halorubrum 1963271 Halorubraceae Halorubraceae 1644055 Haloferacales Haloferacales 183963 Halobacteria Halobacteria 3 3 3 3 1 Thermococcus sp. B1001 91619 1 2 Thermococcus kodakarensis 311400 2 2263 Thermococcus Thermococcus 2259 Thermococcaceae Thermococcaceae 2258 Thermococcales Thermococcales 183968 Thermococci Thermococci 28890 Euryarchaeota Euryarchaeota 1 uncultured bacterium Contig1529 1393449 1 4 4 4 4 4 3 Thermotoga maritima 2336 3 1 Thermotoga neapolitana 2337 1 2335 Thermotoga Thermotoga 188709 Thermotogaceae Thermotogaceae 2419 Thermotogales Thermotogales 200918 Thermotogae Thermotogae 200918 Thermotogae Thermotogae 1 all all