0.970.570.980.981.000.950.990.990.990.940.960.860.970.990.990.950.991.001.000.880.960.570.970.950.950.990.990.990.990.870.570.970.980.991.000.991.001.000.750.400.840.840.570.620.580.760.870.910.990.970.981.000.980.990.990.990.810.390.840.850.580.620.590.760.870.990.300.990.480.990.941.000.991.001.000.980.990.970.980.980.990.990.991.000.990.970.580.950.991.000.960.990.990.990.870.550.971.000.310.970.990.960.991.000.990.940.970.560.970.971.000.990.991.000.990.880.580.951.000.980.960.960.990.990.990.960.950.560.970.981.000.950.990.990.990.750.390.840.850.570.620.580.760.870.760.390.840.840.600.610.590.760.870.760.410.840.850.580.620.580.760.970.950.950.970.970.910.960.991.000.990.970.990.970.990.990.980.991.001.000.990.520.980.900.990.990.981.001.000.990.970.950.980.910.960.950.961.001.001.000.880.950.980.910.990.990.951.001.000.990.750.360.820.860.840.570.620.580.760.870.900.560.981.000.991.000.971.001.001.000.800.360.820.860.580.620.590.760.871.000.950.490.990.940.951.001.000.990.970.560.980.990.990.951.001.001.001.000.980.971.000.981.000.981.001.001.000.860.950.980.980.990.991.001.001.000.980.950.980.971.000.951.001.001.000.870.950.970.990.960.951.001.001.000.980.940.980.991.000.981.001.001.000.770.360.820.860.860.570.620.580.760.870.760.360.820.860.850.600.610.590.760.870.760.380.820.890.860.580.620.580.760.960.570.980.990.970.910.961.001.000.990.520.960.560.981.000.990.990.971.001.000.990.930.960.511.000.990.950.940.961.001.000.990.890.511.000.990.980.980.961.001.001.000.740.380.840.900.840.560.620.580.760.870.890.851.000.900.980.990.971.001.000.990.790.380.840.850.570.620.590.760.870.900.840.480.990.930.961.001.001.000.960.851.000.980.980.951.001.000.990.990.520.980.900.990.991.001.001.000.990.870.501.000.970.981.001.001.000.990.970.970.501.000.970.990.951.001.000.990.880.510.980.980.950.971.000.990.990.970.990.501.000.980.991.001.000.990.990.760.380.840.900.850.560.620.580.760.870.750.380.840.900.840.590.600.590.760.870.750.400.840.920.850.570.620.580.760.970.950.891.000.910.970.900.971.001.000.990.950.851.000.900.990.980.971.001.001.000.870.951.001.000.960.941.001.001.000.990.760.340.840.910.820.600.620.580.760.870.890.561.000.910.960.950.991.001.001.000.810.360.840.840.620.620.590.760.870.910.850.450.950.991.001.001.000.990.960.561.000.960.940.991.001.001.000.970.960.980.910.950.950.961.001.001.000.870.921.000.950.940.971.001.001.000.900.990.951.000.950.950.991.001.001.000.900.980.980.960.930.971.001.001.000.900.970.921.000.960.950.961.001.001.000.760.360.840.910.840.600.620.580.760.870.770.360.840.910.830.630.610.590.760.870.770.330.840.930.840.620.620.580.760.910.970.561.000.900.950.960.971.001.000.990.950.561.000.910.960.940.991.001.000.990.820.380.840.910.840.580.620.580.760.870.960.561.000.910.990.990.981.001.000.990.860.380.840.860.590.620.590.760.870.910.850.470.980.931.001.001.001.000.880.561.000.990.981.001.001.000.990.880.970.980.910.980.990.961.001.000.990.980.941.000.981.000.961.001.000.990.880.981.000.970.991.001.001.000.990.970.900.970.980.990.980.971.000.990.990.900.941.000.990.990.961.000.990.990.830.840.380.840.910.860.580.620.580.760.870.830.830.380.840.910.850.590.610.590.760.870.830.830.380.840.930.860.590.620.580.760.840.571.000.900.970.900.971.001.000.990.870.561.000.910.990.980.981.001.001.000.830.390.840.860.840.570.620.580.760.870.930.981.000.980.970.790.970.981.000.990.860.820.450.840.600.620.580.760.870.770.390.840.850.560.620.580.760.870.750.360.820.860.840.570.620.580.760.870.830.370.840.840.580.620.580.760.870.760.380.840.840.570.620.580.760.870.770.360.820.850.570.620.580.760.870.740.360.840.840.570.620.580.760.870.880.961.001.000.991.000.981.001.001.000.960.981.001.000.990.780.950.981.000.990.960.931.000.980.970.790.980.991.000.750.390.840.850.830.590.620.580.760.860.780.390.840.860.840.560.620.580.760.870.870.380.840.860.580.620.590.760.871.000.950.470.980.940.981.001.000.990.921.001.001.000.990.990.981.001.001.000.900.570.980.791.000.981.000.961.001.001.000.960.551.000.770.980.990.971.001.001.000.900.551.000.971.000.981.001.001.000.900.570.980.990.960.981.001.001.000.880.551.000.950.991.000.971.001.001.000.830.380.840.860.860.570.620.580.760.870.840.380.840.860.850.600.610.590.760.870.840.400.840.890.860.580.620.580.760.880.951.000.990.970.910.981.001.000.990.911.001.001.000.990.991.001.001.000.990.450.850.620.620.590.760.870.820.380.840.860.570.610.590.760.870.800.360.820.850.580.610.590.760.870.870.370.840.850.590.620.590.760.870.810.380.840.850.580.610.590.760.870.820.360.820.860.580.620.590.760.870.790.360.840.860.580.620.590.760.870.870.981.000.980.790.980.981.000.990.951.001.000.990.990.971.000.990.990.950.941.000.991.000.990.980.990.790.380.840.850.590.620.590.760.870.840.380.840.860.570.620.590.760.870.970.480.970.980.931.001.001.000.991.000.480.950.990.940.961.001.000.990.990.310.470.300.990.310.970.930.961.001.000.990.480.970.941.001.001.000.990.990.480.300.990.980.910.971.000.990.990.470.980.940.961.000.990.990.860.450.820.850.600.620.580.760.870.860.450.820.840.630.610.590.760.870.890.450.840.850.620.620.580.760.990.470.940.970.970.971.001.000.991.000.480.950.990.930.981.001.001.000.970.570.980.790.980.990.961.001.001.000.880.551.000.770.980.310.980.980.961.001.001.000.970.551.000.970.990.991.001.001.000.890.570.980.980.990.950.961.000.991.000.950.551.000.950.990.990.951.000.991.000.770.380.840.860.560.620.580.760.870.780.380.840.860.590.600.590.760.870.780.400.840.860.570.610.580.760.950.951.000.970.900.961.001.000.990.991.001.000.990.980.981.001.000.990.860.950.980.960.970.990.991.001.001.000.980.970.980.971.000.961.001.001.000.870.970.970.980.960.971.001.001.000.980.950.980.790.981.001.001.001.001.000.770.360.820.860.850.570.620.580.760.870.760.360.820.860.840.600.600.590.760.870.760.340.820.890.850.580.610.580.760.960.580.980.990.970.910.971.001.000.990.960.570.981.000.990.990.961.001.000.991.001.001.000.960.990.971.000.960.881.000.991.000.970.980.981.000.310.980.940.901.000.991.001.000.990.980.781.000.980.880.870.760.580.620.580.850.840.370.820.870.760.590.610.590.840.840.370.840.760.580.620.590.850.840.360.840.991.001.000.970.900.971.000.550.840.991.001.000.970.980.981.000.550.870.890.970.980.970.960.961.000.991.000.970.980.961.000.971.000.951.000.991.000.760.380.840.850.570.620.580.760.870.770.380.840.840.600.600.590.760.870.770.380.840.850.580.610.580.760.970.960.561.000.960.910.961.001.000.990.960.551.000.970.990.981.001.000.990.890.940.980.990.960.971.001.001.000.830.770.360.820.860.570.620.580.760.870.830.780.360.820.860.580.600.590.760.870.820.780.360.820.860.580.620.580.760.870.570.980.970.890.991.000.990.990.880.570.980.990.950.981.000.990.990.760.360.840.860.570.620.580.760.870.750.360.840.850.600.600.590.760.870.750.350.840.860.580.620.580.760.990.940.561.000.970.910.971.000.990.990.940.551.000.990.990.971.000.990.990.910.890.981.001.000.980.780.960.981.000.990.910.890.931.000.980.980.790.980.991.000.750.380.840.850.850.590.620.580.760.860.760.380.840.860.860.560.620.580.760.870.991.000.941.000.980.990.990.970.980.990.760.380.840.850.840.600.610.590.760.870.790.380.840.860.850.590.610.590.760.870.760.400.840.880.850.590.620.580.760.790.400.840.890.860.570.620.580.760.320.940.951.000.990.970.900.981.001.000.99APIS016--NP_049750.1NC_000866.4:71253-77337NP_049745.2NP_049746.1NP_049747.1NP_049748.1NP_049749.1NP_049750.1NP_049751.1NP_049752.1NP_049753.1NP_049754.1NP_049755.1APIS016--KX009778_00148KX009778:69475-74910KX009778_00140KX009778_00144KX009778_00145KX009778_00146KX009778_00147KX009778_00148KX009778_00149KX009778_00150KX009778_00151KX009778_00152KX009778_00153APIS016--MK962755_00149MK962755:70052-75023MK962755_00144MK962755_00145MK962755_00146MK962755_00147MK962755_00148MK962755_00149MK962755_00150MK962755_00151MK962755_00152MK962755_00153MK962755_00154APIS016--MK373786_00155MK373786:71090-76105MK373786_00150MK373786_00151MK373786_00152MK373786_00153MK373786_00154MK373786_00155MK373786_00156MK373786_00157MK373786_00158MK373786_00159MK373786_00160APIS016--MW341595_00202MW341595:104810-109974MW341595_00197MW341595_00198MW341595_00199MW341595_00200MW341595_00201MW341595_00202MW341595_00203MW341595_00204MW341595_00205MW341595_00206MW341595_00207APIS016--MK327936_00142MK327936:70488-75688MK327936_00137MK327936_00138MK327936_00139MK327936_00140MK327936_00141MK327936_00142MK327936_00143MK327936_00144MK327936_00145MK327936_00146MK327936_00147APIS016--MW749001_00151MW749001:64561-70643MW749001_00135MW749001_00147MW749001_00148MW749001_00149MW749001_00150MW749001_00151MW749001_00152MW749001_00153MW749001_00154MW749001_00155MW749001_00156APIS016--MT682710_00039MT682710:10302-16777MT682710_00024MT682710_00025MT682710_00036MT682710_00037MT682710_00038MT682710_00039MT682710_00040MT682710_00041MT682710_00042MT682710_00043MT682710_00044APIS016--MZ502380_00147MZ502380:68947-74944MZ502380_00132MZ502380_00143MZ502380_00144MZ502380_00145MZ502380_00146MZ502380_00147MZ502380_00148MZ502380_00149MZ502380_00150MZ502380_00151MZ502380_00152APIS016--MF001359_00146MF001359:69170-75339MF001359_00130MF001359_00142MF001359_00143MF001359_00144MF001359_00145MF001359_00146MF001359_00147MF001359_00148MF001359_00149MF001359_00150MF001359_00151APIS016--MF001360_00175MF001360:80466-86431MF001360_00160MF001360_00171MF001360_00172MF001360_00173MF001360_00174MF001360_00175MF001360_00176MF001360_00177MF001360_00178MF001360_00179MF001360_00180APIS016--MT446387_00104MT446387:81219-86155MT446387_00099MT446387_00100MT446387_00101MT446387_00102MT446387_00103MT446387_00104MT446387_00105MT446387_00106MT446387_00107MT446387_00108MT446387_00109APIS016--MK962752_00155MK962752:71457-76430MK962752_00150MK962752_00151MK962752_00152MK962752_00153MK962752_00154MK962752_00155MK962752_00156MK962752_00157MK962752_00158MK962752_00159MK962752_00160APIS016--HM035025_00145HM035025:67612-73573HM035025_00130HM035025_00141HM035025_00142HM035025_00143HM035025_00144HM035025_00145HM035025_00146HM035025_00147HM035025_00148HM035025_00149HM035025_00150APIS016--MK962750_00147MK962750:71437-76474MK962750_00142MK962750_00143MK962750_00144MK962750_00145MK962750_00146MK962750_00147MK962750_00148MK962750_00149MK962750_00150MK962750_00151MK962750_00152APIS016--MZ501047_00254MZ501047:145477-150707MZ501047_00249MZ501047_00250MZ501047_00251MZ501047_00252MZ501047_00253MZ501047_00254MZ501047_00255MZ501047_00256MZ501047_00257MZ501047_00258MZ501047_00259APIS016--MZ311865_00060MZ311865:22299-27529MZ311865_00055MZ311865_00056MZ311865_00057MZ311865_00058MZ311865_00059MZ311865_00060MZ311865_00061MZ311865_00062MZ311865_00063MZ311865_00064MZ311865_00065APIS016--MZ501056_00249MZ501056:144891-150318MZ501056_00244MZ501056_00245MZ501056_00246MZ501056_00247MZ501056_00248MZ501056_00249MZ501056_00250MZ501056_00251MZ501056_00252MZ501056_00253MZ501056_00254APIS016--MK524178_00242MK524178:135108-140166MK524178_00237MK524178_00238MK524178_00239MK524178_00240MK524178_00241MK524178_00242MK524178_00243MK524178_00244MK524178_00245MK524178_00246MK524178_00247APIS016--MK373782_00151MK373782:73952-78990MK373782_00146MK373782_00147MK373782_00148MK373782_00149MK373782_00150MK373782_00151MK373782_00152MK373782_00153MK373782_00154MK373782_00155MK373782_00156homing endonucleaseinternal virion proteinRNA ligase (APIS gene)tail fiber chaperonedeoxynucleoside monophosphate kinasetail proteinDNA end protectorhead closureGroup 8Group 9Group 10Group 11Group 12Group 13Identity (%)01002.5kb

Instructions:

  • Drag cluster names to re-order clusters
  • Hover over a locus to reveal box and handles; drag box to move the locus, drag handles to resize it, double click to flip
  • Click genes to anchor the figure around them
  • Right click genes to edit their labels
  • Click cluster names and legend entries to rename them
  • Click legend circles to change gene colours
  • Right click legend entries to remove them and hide links
  • Click scale bar text to change its length
  • Tweak other options below!

If you found clinker useful, please cite:

          clinker & clustermap.js: Automatic generation of gene cluster comparison figures
          Cameron L.M. Gilchrist, Yit-Heng Chooi
          Bioinformatics. doi: https://doi.org/10.1093/bioinformatics/btab007

Plot arrangement

Cluster settings

Gene arrows

Gene labels

Scale bar

Colour bar

Legend

Links