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CAZyme Gene Cluster: NC_000913.3|CGC47

CGC gene composition diagram | Gene composition table | Substrate predicted by dbCAN-sub |  Substrate predicted by dbCAN-PUL search  |  Filtered homologs of dbCAN-PUL hits  

CGC gene composition diagram

Gene composition table

Protein ID Type Start End Strand Signature
NC_000913.3_3356 CAZyme 3564134 3566581 - GT35_e0|GT35
NC_000913.3_3357 CAZyme 3566600 3568033 - GT5_e31|GT5
NC_000913.3_3358 null 3568033 3569328 -
NC_000913.3_3359 CAZyme 3569346 3571319 - GH13_11|CBM48_e3|CBM48|GH13_e48
NC_000913.3_3360 CAZyme 3571316 3573502 - GH13_e200|CBM48_e2|GH13_9|CBM48
NC_000913.3_3361 null 3573775 3574878 -
NC_000913.3_3362 TC 3575071 3575664 + 2.A.95.1.5
NC_000913.3_3363 TC 3575721 3577061 - 2.A.8.1.8

Substrate predicted by best dbCAN-PUL hit is glycogen download this fig


All filtered homologs of dbCAN-PUL hits

qseqid sseqid PULID pident length mismatch gapopen qstart qend sstart send evalue bitscore qlen slen
NC_000913.3_3356|CAZyme|GT35_e0;GT35 PUL0267_6|CAZyme|GT35 PUL0267 43.583 787 422 10 36 815 27 798 0.0 651.0 816 803
NC_000913.3_3357|CAZyme|GT5_e31;GT5 PUL0267_5|CAZyme|GT5 PUL0267 33.811 488 291 9 1 473 1 471 2.02e-94 292.0 478 476
NC_000913.3_3358|null PUL0267_3|CDS PUL0267 38.482 382 210 6 21 401 6 363 2.28e-87 269.0 432 381
NC_000913.3_3360|CAZyme|GH13_e200;CBM48_e2;GH13_9;CBM48 PUL0267_2|CAZyme|GH13_9;CBM48;GH13 PUL0267 39.610 616 358 7 113 723 14 620 5.35e-153 457.0 729 638
NC_000913.3_3356|CAZyme|GT35_e0;GT35 PUL0058_5|CAZyme|GT35 PUL0058 44.025 795 428 5 24 813 15 797 0.0 653.0 816 798
NC_000913.3_3357|CAZyme|GT5_e31;GT5 PUL0058_4|CAZyme|GT5 PUL0058 36.864 491 273 11 1 473 1 472 5.14e-98 301.0 478 484
NC_000913.3_3358|null PUL0058_2|CDS PUL0058 41.235 405 204 8 21 424 6 377 7.91e-99 298.0 432 380
NC_000913.3_3360|CAZyme|GH13_e200;CBM48_e2;GH13_9;CBM48 PUL0058_1|CAZyme|GH13;CBM48;GH13_9 PUL0058 43.019 616 329 7 109 717 10 610 2.31e-173 509.0 729 627

Substrate predicted by dbCAN-sub is glycogen,sucrose

Protein ID dbCAN-sub subfam CAZyme substrate EC number
NC_000913.3_3356 GT35_e0 2.4.1.1
NC_000913.3_3357 GT5_e31 2.4.1.21
NC_000913.3_3358
NC_000913.3_3359 CBM48_e3|GH13_e48 sucrose,glycogen,starch 3.2.1.68,2.4.1.25,3.2.1.-
NC_000913.3_3360 CBM48_e2|GH13_e200 sucrose,glycogen,alpha-glucan 2.4.1.18
NC_000913.3_3361
NC_000913.3_3362
NC_000913.3_3363