Home Repository Download Help About Statistics Taxonomy Blastx
Links
PULDB
CAZy
dbCAN2
dbCAN-seq
run_dbcan
CAZypedia
PlantCAZyme
Cite: NAR/gkaa742 2020



PUL General Information

Literature Information

PUL ID

PUL0007

PubMed

27274361, Stand Genomic Sci. 2016 Jun 7;11:40. doi: 10.1186/s40793-016-0164-8. eCollection 2016.

Characterization method

sequence homology analysis

Genomic accession number

LN890332.1

Nucelotide position range

5399-15957

Substrate

galactan

Loci

LEKG_1953-LEKG_1960

Species

Leuconostoc gelidum/1244

Degradation or Biosynthesis

degradation

Gene Name

Locus Tag

Protein ID

Gene Position

GenBank Contig Range

EC Number

- LEKG_1953 CUR64540.1 0 - 129 (-) LN890332.1:5399-5528 -
galK2 LEKG_1954 CUR64541.1 228 - 1419 (-) LN890332.1:5627-6818 -
galE2 LEKG_1955 CUR64542.1 1441 - 2446 (-) LN890332.1:6840-7845 -
galT2 LEKG_1956 CUR64543.1 2452 - 3961 (-) LN890332.1:7851-9360 -
ganB LEKG_1957 CUR64544.1 4086 - 5325 (-) LN890332.1:9485-10724 -
lacS2 LEKG_1958 CUR64545.1 5346 - 7266 (-) LN890332.1:10745-12665 -
ganA LEKG_1959 CUR64546.1 7281 - 9333 (-) LN890332.1:12680-14732 -
ganR LEKG_1960 CUR64547.1 9545 - 10559 (+) LN890332.1:14944-15958 -

Cluster number

1

Gene name

Gene position

Gene type

Found by CGCFinder?

- 1 - 129 (-) CDS No
galK2 229 - 1419 (-) CDS No
galE2 1442 - 2446 (-) CDS No
galT2 2453 - 3961 (-) CDS No
ganB 4087 - 5325 (-) CAZyme: GH53 Yes
lacS2 5347 - 7266 (-) TC: gnl|TC-DB|P43466|2.A.2.2.2 Yes
ganA 7282 - 9333 (-) CAZyme: GH42 Yes
ganR 9546 - 10559 (+) TF: DBD-Pfam|LacI,DBD-SUPERFAMILY|0044558 No

PUL ID

PUL0007

PubMed

27274361, Stand Genomic Sci. 2016 Jun 7;11:40. doi: 10.1186/s40793-016-0164-8. eCollection 2016.

Title

Complete genome sequence of Leuconostoc gelidum subsp. gasicomitatum KG16-1, isolated from vacuum-packaged vegetable sausages.

Author

Andreevskaya M, Hultman J, Johansson P, Laine P, Paulin L, Auvinen P, Bjorkroth J

Abstract

Leuconostoc gelidum subsp. gasicomitatum is a predominant lactic acid bacterium (LAB) in spoilage microbial communities of different kinds of modified-atmosphere packaged (MAP) food products. So far, only one genome sequence of a poultry-originating type strain of this bacterium (LMG 18811(T)) has been available. In the current study, we present the completely sequenced and functionally annotated genome of strain KG16-1 isolated from a vegetable-based product. In addition, six other vegetable-associated strains were sequenced to study possible "niche" specificity suggested by recent multilocus sequence typing. The genome of strain KG16-1 consisted of one circular chromosome and three plasmids, which together contained 2,035 CDSs. The chromosome carried at least three prophage regions and one of the plasmids encoded a galactan degradation cluster, which might provide a survival advantage in plant-related environments. The genome comparison with LMG 18811(T) and six other vegetable strains suggests no major differences between the meat- and vegetable-associated strains that would explain their "niche" specificity. Finally, the comparison with the genomes of other leuconostocs highlights the distribution of functionally interesting genes across the L. gelidum strains and the genus Leuconostoc.