PUL ID |
PUL0192 |
PubMed |
26920945, BMC Genomics. 2016 Feb 27;17:147. doi: 10.1186/s12864-016-2472-1. |
Characterization method |
RNA-Seq,RT-PCR,qPCR |
Genomic accession number |
FP929033.1 |
Nucelotide position range |
4024208-4079442 |
Substrate |
pectin |
Loci |
BXY_32120-BXY_32390 |
Species |
Bacteroides xylanisolvens/371601 |
Degradation or Biosynthesis |
degradation |
Cluster number |
1 | ||
Gene name |
Gene position |
Gene type |
Found by CGCFinder? |
- | 1 - 2766 (-) | CAZyme: GH106 | Yes |
- | 2766 - 4169 (-) | CAZyme: GH28 | Yes |
- | 4166 - 4768 (-) | other | Yes |
- | 4719 - 6254 (-) | CAZyme: GH28 | Yes |
- | 6310 - 7548 (-) | CAZyme: CE12 | Yes |
- | 7679 - 10555 (-) | CAZyme: GH2 | Yes |
- | 10554 - 10682 (+) | other | Yes |
- | 10844 - 13156 (+) | CAZyme: GH43_18|GH43_34|GH43|CBM32 | Yes |
- | 13787 - 15877 (+) | CAZyme: GH42 | Yes |
- | 15940 - 17322 (+) | CAZyme: GH28 | Yes |
- | 17411 - 18100 (+) | other | Yes |
- | 18193 - 20274 (-) | other | Yes |
- | 20299 - 23430 (-) | TC: gnl|TC-DB|Q45780|1.B.14.6.1 | Yes |
- | 25047 - 26084 (+) | other | Yes |
- | 26139 - 27764 (+) | other | Yes |
- | 27825 - 31004 (+) | TC: gnl|TC-DB|Q45780|1.B.14.6.1 | Yes |
- | 31026 - 33038 (+) | other | Yes |
- | 33086 - 36136 (+) | TC: gnl|TC-DB|Q45780|1.B.14.6.1 | Yes |
- | 36158 - 37879 (+) | other | Yes |
- | 37957 - 40092 (+) | CAZyme: PL11|PL11_1 | Yes |
- | 40264 - 43662 (+) | CAZyme: PL26 | Yes |
- | 43981 - 45615 (-) | CAZyme: CE12 | Yes |
- | 45745 - 46836 (-) | CAZyme: GH105 | Yes |
- | 47129 - 48970 (+) | CAZyme: PL11_1 | Yes |
- | 48974 - 50383 (+) | CAZyme: GH105 | Yes |
- | 50403 - 50717 (+) | CDS | No |
- | 50868 - 55235 (+) | TF: DBD-Pfam|HTH_AraC,DBD-Pfam|HTH_AraC,DBD-SUPERFAMILY|0036286,DBD-SUPERFAMILY|0035607 | No |
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