| PULID | Characterization Method(s) | Substrate | Organism | Publication | Publish Date | Type | Num Genes | Num CAZymes | CazyFamily |
|---|---|---|---|---|---|---|---|---|---|
| PUL0025 | sugar utilization assay, NMR, sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii | 32093600 Elucidation of the K32 Capsular Polysaccharide Structure and Characterization of the KL32 Gene Cluster of Acinetobacter baumannii LUH5549. Biochemistry (Mosc). 2020 Feb;85(2):241-247. doi: 10.1134/S000629792002011X. |
2020 Feb | biosynthesis | 18 | 4 | GT2, GT4, GT0, GT2 |
| PUL0069 | sugar utilization assay, NMR, sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii | 30664967 Production of the K16 capsular polysaccharide by Acinetobacter baumannii ST25 isolate D4 involves a novel glycosyltransferase encoded in the KL16 gene cluster. Int J Biol Macromol. 2019 May 1;128:101-106. doi: 10.1016/j.ijbiomac.2019.01.080. Epub 2019 Jan 18. |
2019 May 1 | biosynthesis | 22 | 2 | GT0, GT2 |
| PUL0070 | sugar utilization assay, NMR, sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii | 30664967 Production of the K16 capsular polysaccharide by Acinetobacter baumannii ST25 isolate D4 involves a novel glycosyltransferase encoded in the KL16 gene cluster. Int J Biol Macromol. 2019 May 1;128:101-106. doi: 10.1016/j.ijbiomac.2019.01.080. Epub 2019 Jan 18. |
2019 May 1 | biosynthesis | 36 | 3 | GT52, GT0, GT14, GT2, GT25, GT4, CE4 |
| PUL0071 | sugar utilization assay, NMR, sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii | 30664967 Production of the K16 capsular polysaccharide by Acinetobacter baumannii ST25 isolate D4 involves a novel glycosyltransferase encoded in the KL16 gene cluster. Int J Biol Macromol. 2019 May 1;128:101-106. doi: 10.1016/j.ijbiomac.2019.01.080. Epub 2019 Jan 18. |
2019 May 1 | biosynthesis | 38 | 4 | GT0, GT14, GT2, GT25, GT4, CE4 |
| PUL0072 | sugar utilization assay, NMR, sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii | 30664967 Production of the K16 capsular polysaccharide by Acinetobacter baumannii ST25 isolate D4 involves a novel glycosyltransferase encoded in the KL16 gene cluster. Int J Biol Macromol. 2019 May 1;128:101-106. doi: 10.1016/j.ijbiomac.2019.01.080. Epub 2019 Jan 18. |
2019 May 1 | biosynthesis | 22 | 2 | GT2, GT0 |
| PUL0188 | NMR, sugar utilization assay | O-antigen | Escherichia coli | 26582605 Structure and gene cluster of the O-antigen of Escherichia coli O165 containing 5-N-acetyl-7-N-[(R)-3-hydroxybutanoyl]pseudaminic acid. Glycobiology. 2016 Apr;26(4):335-42. doi: 10.1093/glycob/cwv106. Epub 2015 Nov 17. |
2016 Apr | biosynthesis | 10 | 3 | GT0, GT2 |
| PUL0253 | gene chips | capsule polysaccharide | Bacteroides thetaiotaomicron | 23996813 Regulated expression of polysaccharide utilization and capsular biosynthesis loci in biofilm and planktonic Bacteroides thetaiotaomicron during growth in chemostats. Biotechnol Bioeng. 2014 Jan;111(1):165-73. doi: 10.1002/bit.24994. Epub 2013 Jul 30. |
2014 Jan | degradation | 32 | 13 | GT2, GT2, GT101, GT0, GT2, GT2, GT4, GT4, GH27 |
| PUL0261 | gene chips | capsule polysaccharide | Bacteroides thetaiotaomicron | 23996813 Regulated expression of polysaccharide utilization and capsular biosynthesis loci in biofilm and planktonic Bacteroides thetaiotaomicron during growth in chemostats. Biotechnol Bioeng. 2014 Jan;111(1):165-73. doi: 10.1002/bit.24994. Epub 2013 Jul 30. |
2014 Jan | degradation | 17 | 10 | GT4, GT0, GT4, GT4, GT2, GT14, GT14, GT32, GT8, GT2, GT2 |
| PUL0454 | SDS-PAGE, protein fingerprinting (MALDI-TOF PMF) | acarbose | Actinoplanes sp. SE50/110 | 22944206 The cytosolic and extracellular proteomes of Actinoplanes sp. SE50/110 led to the identification of gene products involved in acarbose metabolism. J Biotechnol. 2013 Aug 20;167(2):178-89. doi: 10.1016/j.jbiotec.2012.08.011. Epub 2012 Aug 31. |
2013 Aug 20 | biosynthesis | 22 | 4 | GH13_13, CBM41, GH13, GT5, GT0, GT5, GT0, GH77, GH13_13, CBM41, CBM20, GH13_2 |
| PUL0462 | sequence homology analysis, sugar utilization assay, NMR | O-antigen | Escherichia coli | 24607538 Structure elucidation and gene cluster annotation of the O-antigen of Escherichia coli O39; application of anhydrous trifluoroacetic acid for selective cleavage of glycosidic linkages. Carbohydr Res. 2014 Mar 31;388:30-6. doi: 10.1016/j.carres.2014.02.013. Epub 2014 Feb 18. |
2014 Mar 31 | biosynthesis | 14 | 4 | GT0, GT4, GT2 |
| PUL0491 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 20 | 4 | GT46, GT0 |
| PUL0492 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 21 | 3 | GT2, GT0 |
| PUL0493 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 14 | 5 | GT2, GT4, GT4, GT0, GT10, GT2 |
| PUL0499 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 14 | 7 | GT2, GT2, GT101, GT0, GT4, GT2, GT2, GT2 |
| PUL0500 | sequence homology analysis, microscopy | O-glycan | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 9 | 4 | GT4, GT0, GT94, GT4, GT4, GT2 |
| PUL0504 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 16 | 5 | GT2, GT2, GT2, GT11, GT0, GT10 |
| PUL0512 | sequence homology analysis, microscopy | O-glycan | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 10 | 4 | GT4, GT0, GT94, GT4, GT4, GT2 |
| PUL0515 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 20 | 4 | GT0, GT46 |
| PUL0524 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 13 | 7 | GT2, GT2, GT4, GT101, GT0, GT4, GT2, GT2 |
| PUL0525 | sequence homology analysis, microscopy | O-glycan | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 9 | 5 | GT0, GT94, GT4, GT4, GT2 |
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