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CAZyme Information: MGYG000000007_01509

You are here: Home > Sequence: MGYG000000007_01509

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Lactobacillus intestinalis
Lineage Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; Lactobacillus intestinalis
CAZyme ID MGYG000000007_01509
CAZy Family GT51
CAZyme Description Penicillin-binding protein 1F
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
685 75880.7 9.9714
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000007 2016167 Isolate United Kingdom Europe
Gene Location Start: 64584;  End: 66641  Strand: -

Full Sequence      Download help

MQSNKPKESG  LKGAWRRFDH  RFYIGRWIIL  ILLTLVLFTC  TYYTIKVKTS  NISNLKASLS60
TTTTIYDYKG  KKAGSLYSQK  GSFVEYNKIS  PNIRNAVIST  EDRTFWTNPG  FSIKGMARAG120
VNLIIHHGQI  TGGGSTLTQQ  LAKNSLLTQQ  QTFSRKLEEL  FFAIEINHVY  SKKDILTMYL180
NNAYFGNGVW  GVQDASRKYF  GKNASDVTVG  EAATLAGILR  SPSYYNPIDH  MANALSRRNL240
VLSLMASNGK  ITQQEAKAAS  QTGLELHDTF  KNKDGYRYPY  FFDAVVDEAI  NRYGLKEEDV300
MNRGLKIYTT  LNQNYQGQLQ  DKFEQSWLFP  QSATDGTQVQ  GASVVMDPTT  GAVRAVIGGR360
GKHVFRGYNR  ATQMKRQPGS  SIKPLAVYSP  ALQNGYHYDS  ELSNKLQKFG  KNNYEPRNVD420
NQYSDKIPMY  QALAQSKNVP  AVWLLDKIGV  NKGVQSVENF  GIKVPKDDQN  LALALGGLSS480
GVSPLQMARA  YSAFANKGNL  PNNSYFITKI  TDASGKVLAE  NNNTGTHRII  SANTAKEMTT540
MMLGVFQNGT  AQSAQPNGFR  VAGKTGSTEV  PNSYGFGTKD  QWIVGYTPDI  VMATWVGFDR600
TNQDHYMHGV  SETGITRLYK  AEMEGILPYT  AQTKFSEQAP  SQLIKQNGSN  SDWTGDLGNK660
LQKGIGSAGE  KLNEWYNSIK  GLFGN685

Enzyme Prediction      help

No EC number prediction in MGYG000000007_01509.

CAZyme Signature Domains help

Created with Snap346810213717120523927430834237641144547951354858261665070245GT51
Family Start End Evalue family coverage
GT51 70 245 3.4e-64 0.9830508474576272

CDD Domains      download full data without filtering help

Created with Snap346810213717120523927430834237641144547951354858261665080629PBP_1a_fam45651MrcB41614MrcA71655PBP_1b55602PbpC
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
TIGR02074 PBP_1a_fam 0.0 80 629 1 531
penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]
COG0744 MrcB 0.0 45 651 38 623
Membrane carboxypeptidase (penicillin-binding protein) [Cell wall/membrane/envelope biogenesis].
COG5009 MrcA 1.55e-140 41 614 23 703
Membrane carboxypeptidase/penicillin-binding protein [Cell wall/membrane/envelope biogenesis].
TIGR02071 PBP_1b 6.55e-98 71 655 134 699
penicillin-binding protein 1B. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]
COG4953 PbpC 1.50e-85 55 602 29 540
Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell wall/membrane/envelope biogenesis].

CAZyme Hits      help

Created with Snap34681021371712052392743083423764114454795135485826166501684AZN76117.1|GT511684CBF97159.1|GT511684AGK94746.1|GT511684ATO54057.1|GT511684AJP46903.1|GT51
Hit ID E-Value Query Start Query End Hit Start Hit End
AZN76117.1 0.0 1 684 1 684
CBF97159.1 0.0 1 684 1 684
AGK94746.1 0.0 1 684 1 684
ATO54057.1 0.0 1 684 1 684
AJP46903.1 0.0 1 684 1 684

PDB Hits      download full data without filtering help

Created with Snap34681021371712052392743083423764114454795135485826166501656853ZG8_B1656853ZG7_B656033DWK_A656004OON_A846003UDF_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
3ZG8_B 1.20e-166 165 685 2 530
CrystalStructure of Penicillin Binding Protein 4 from Listeria monocytogenes in the Ampicillin bound form [Listeria monocytogenes],3ZG9_B Crystal Structure of Penicillin-Binding Protein 4 from Listeria monocytogenes in the Cefuroxime bound form [Listeria monocytogenes],3ZGA_B Crystal Structure of Penicillin-Binding Protein 4 from Listeria monocytogenes in the Carbenicillin bound form [Listeria monocytogenes]
3ZG7_B 1.64e-155 165 685 2 530
CrystalStructure of Penicillin-Binding Protein 4 from Listeria monocytogenes in the apo form [Listeria monocytogenes]
3DWK_A 1.40e-66 65 603 10 562
ChainA, Penicillin-binding protein 2 [Staphylococcus aureus subsp. aureus COL],3DWK_B Chain B, Penicillin-binding protein 2 [Staphylococcus aureus subsp. aureus COL],3DWK_C Chain C, Penicillin-binding protein 2 [Staphylococcus aureus subsp. aureus COL],3DWK_D Chain D, Penicillin-binding protein 2 [Staphylococcus aureus subsp. aureus COL]
4OON_A 2.84e-63 65 600 23 697
Crystalstructure of PBP1a in complex with compound 17 ((4Z,8S,11E,14S)-5-(2-amino-1,3-thiazol-4-yl)-14-(5,6-dihydroxy-1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)-8-formyl-2-methyl-6-oxo-3,10-dioxa-4,7,11-triazatetradeca-4,11-diene-2,12,14-tricarboxylic acid) [Pseudomonas aeruginosa PAO1]
3UDF_A 7.82e-63 84 600 42 690
ChainA, Penicillin-binding protein 1a [Acinetobacter baumannii],3UDF_B Chain B, Penicillin-binding protein 1a [Acinetobacter baumannii],3UDI_A Chain A, Penicillin-binding protein 1a [Acinetobacter baumannii],3UDI_B Chain B, Penicillin-binding protein 1a [Acinetobacter baumannii],3UDX_A Chain A, Penicillin-binding protein 1a [Acinetobacter baumannii],3UDX_B Chain B, Penicillin-binding protein 1a [Acinetobacter baumannii],3UE0_A Chain A, Penicillin-binding protein 1a [Acinetobacter baumannii],3UE0_B Chain B, Penicillin-binding protein 1a [Acinetobacter baumannii],3UE1_A Chain A, Penicillin-binding protein 1a [Acinetobacter baumannii],3UE1_B Chain B, Penicillin-binding protein 1a [Acinetobacter baumannii]

Swiss-Prot Hits      download full data without filtering help

Created with Snap346810213717120523927430834237641144547951354858261665013648sp|A0A0H2ZMF9|PBP2A_STRP213648sp|Q8DNB6|PBP2A_STRR652620sp|P38050|PBPF_BACSU46611sp|P40750|PBPD_BACSU53597sp|P39793|PBPA_BACSU
Hit ID E-Value Query Start Query End Hit Start Hit End Description
A0A0H2ZMF9 7.10e-174 13 648 43 670
Penicillin-binding protein 2a OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) OX=373153 GN=pbp2a PE=1 SV=1
Q8DNB6 7.10e-174 13 648 43 670
Penicillin-binding protein 2a OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) OX=171101 GN=pbp2a PE=1 SV=1
P38050 3.12e-116 52 620 38 591
Penicillin-binding protein 1F OS=Bacillus subtilis (strain 168) OX=224308 GN=pbpF PE=2 SV=2
P40750 4.36e-84 46 611 39 610
Penicillin-binding protein 4 OS=Bacillus subtilis (strain 168) OX=224308 GN=pbpD PE=1 SV=2
P39793 3.33e-82 53 597 69 613
Penicillin-binding protein 1A/1B OS=Bacillus subtilis (strain 168) OX=224308 GN=ponA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000035 0.000008 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      download full data without filtering help

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