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CAZyme Information: MGYG000000010_02529
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Staphylococcus_A lentus | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes; Bacilli; Staphylococcales; Staphylococcaceae; Staphylococcus_A; Staphylococcus_A lentus | |||||||||||
| CAZyme ID | MGYG000000010_02529 | |||||||||||
| CAZy Family | CBM50 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 30687; End: 31574 Strand: - | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG3942 | COG3942 | 1.37e-34 | 174 | 295 | 42 | 171 | Surface antigen [Cell wall/membrane/envelope biogenesis]. |
| PRK08581 | PRK08581 | 8.04e-17 | 192 | 294 | 504 | 616 | amidase domain-containing protein. |
| pfam05257 | CHAP | 4.86e-14 | 193 | 271 | 2 | 83 | CHAP domain. This domain corresponds to an amidase function. Many of these proteins are involved in cell wall metabolism of bacteria. This domain is found at the N-terminus of Escherichia coli gss, where it functions as a glutathionylspermidine amidase EC:3.5.1.78. This domain is found to be the catalytic domain of PlyCA. CHAP is the amidase domain of bifunctional Escherichia coli glutathionylspermidine synthetase/amidase, and it catalyzes the hydrolysis of Gsp (glutathionylspermidine) into glutathione and spermidine. |
| pfam01476 | LysM | 3.38e-12 | 73 | 114 | 1 | 42 | LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known. |
| cd00118 | LysM | 2.23e-10 | 72 | 114 | 2 | 45 | Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QMU10363.1 | 6.47e-176 | 1 | 295 | 1 | 295 |
| SQE51326.1 | 3.03e-120 | 1 | 295 | 1 | 294 |
| QDR64825.1 | 2.47e-119 | 1 | 295 | 1 | 294 |
| QPW13748.1 | 3.51e-119 | 1 | 295 | 1 | 294 |
| ARB41341.1 | 3.51e-119 | 1 | 295 | 1 | 294 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 2K3A_A | 4.18e-47 | 180 | 295 | 36 | 153 | ChainA, CHAP domain protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292] |
| 2LRJ_A | 9.98e-40 | 194 | 295 | 9 | 112 | ChainA, Staphyloxanthin biosynthesis protein, putative [Staphylococcus aureus subsp. aureus COL] |
| 5T1Q_A | 3.51e-18 | 196 | 294 | 248 | 356 | ChainA, N-acetylmuramoyl-L-alanine amidase domain-containing protein SAOUHSC_02979 [Staphylococcus aureus subsp. aureus NCTC 8325],5T1Q_B Chain B, N-acetylmuramoyl-L-alanine amidase domain-containing protein SAOUHSC_02979 [Staphylococcus aureus subsp. aureus NCTC 8325],5T1Q_C Chain C, N-acetylmuramoyl-L-alanine amidase domain-containing protein SAOUHSC_02979 [Staphylococcus aureus subsp. aureus NCTC 8325],5T1Q_D Chain D, N-acetylmuramoyl-L-alanine amidase domain-containing protein SAOUHSC_02979 [Staphylococcus aureus subsp. aureus NCTC 8325] |
| 4CGK_A | 1.84e-13 | 186 | 274 | 277 | 365 | Crystalstructure of the essential protein PcsB from Streptococcus pneumoniae [Streptococcus pneumoniae D39],4CGK_B Crystal structure of the essential protein PcsB from Streptococcus pneumoniae [Streptococcus pneumoniae D39] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q9KJT6 | 4.15e-46 | 157 | 295 | 120 | 257 | Staphylococcal secretory antigen SsaA OS=Staphylococcus epidermidis OX=1282 GN=ssaA PE=3 SV=1 |
| Q5HLV2 | 4.15e-46 | 157 | 295 | 120 | 257 | Staphylococcal secretory antigen SsaA OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) OX=176279 GN=ssaA1 PE=3 SV=1 |
| Q7CCJ3 | 4.15e-46 | 157 | 295 | 120 | 257 | Staphylococcal secretory antigen SsaA OS=Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200) OX=176280 GN=ssaA PE=3 SV=1 |
| Q7A3D7 | 6.11e-45 | 153 | 295 | 106 | 255 | Staphylococcal secretory antigen ssaA1 OS=Staphylococcus aureus (strain N315) OX=158879 GN=ssaA1 PE=3 SV=1 |
| Q6G6A8 | 6.11e-45 | 153 | 295 | 106 | 255 | Staphylococcal secretory antigen ssaA1 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=ssaA1 PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000223 | 0.999057 | 0.000169 | 0.000187 | 0.000172 | 0.000155 |