CAZyme Information: MGYG000000303_01557

Basic Information

• Species: Varibaculum cambriense_A
• Lineage: Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Actinomycetaceae; Varibaculum; Varibaculum cambriense_A
• CAZyme ID: MGYG000000303_01557
• CAZy Family: GH136
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1207		128226.18	6.0876

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000303	2213433	MAG	Sweden	Europe

• Gene Location: Start: 11254; End: 14877 Strand: -

Full Sequence      

MNLKKLAKATGITVLATSLVALSQLPAVAAPVKAEIIPATTYYVSAAGNDANDGKSEAKP
LKTLAAVNKLTLHAGDKILLKRGDVFNNQHLCISGDKAFKFNDGTTCAYQADSDGAPLVI
SAYGEGDKPVIAANGQGQWKLDYGLTLGHSQHYLAKDAVSSTVMLKDAENIELSDLEITN
KRLEDGSGKENGCAYNDNCALDRTGIAGIAQNQGTLDHVVLKNLYVHDVKGNIYNKHSVN
GAIYFSSLIASDQMKPAAERKTPGFKPALDKPEKGYPRFNDLQIINNRVENSGRWGIAAV
YSAYASVAVDGRIQIPGEVITKYGSTNVVISNNYIKNIGGDAITAMYGYKPVVESNVATE
IATQMNTTDYLFAKDTPGKFAKTGGRVAASIWPWKSKDAVFRFNEGFNTQNADKGNGDGM
PWDADSGDGTVYEYNYSANNSGGTVMFCGDQAANSTFRFNIAQNDSLGALSPTFWDGGYS
GKYPNAHVYNNTFYLKAGSSILHPAQAQQGTMKVENNIFYNMSAQPRTESWNPLGHITWD
PKDIDGNAKVTYSHNLYYNYANYPASDLNPVKVSKGSAVLADPGKAPSDAATDMKARPHY
FPGLSYAEADAKTTVFDGYKLAANSPAIGKGKEIVDDNGFALGTDFFGRTANPFDIGAVS
TDQKPLPPATVTDIAKLVSTTYQVTDGETVPSKNGAYKAGNTIHVPSTEKSPSTIAEVLS
NLTVEGKAQIVDAAGNAQAEDALVAAGMKLKITSLDGKVTSEFLLSIDNVYSWLDDYTHN
VQGNVWFGQKQTGANGKWVNIDKADPAWPNWQVDQYYGPGINGAQLAPADRSTLYGLLSD
SPTSAGATAMAWRAPKTGYITFKVKDAAAGKPAEPFLRQGDATGGTVTVKLLVNGSEKRS
LTLEKKEIRPDGEFNFTANDANAIRVSKGDYVRVVAESTGTPAQPSMFVSPTITYIDRTV
DTEVIPVKPGTATGDPDTPTPGQDPQTDKGYVEGKVPGFALSLAGDKVTAKVTLPQVEGI
EYLVNGAPLADSYPAGPVVVTLKAKAGYKLGESATTEWKFTVPATPEFASDTGNLQIPTT
VGVSYDAQNQTVAPGKSVTVAATASDDYSFAATRAVKWTFTADQKDDPKPGTDPEKPGTV
PSDNPTQPDSGTVADGKQKNPNKPTTAVRQNRGSLVTTGSLAGIAAFAALTLGAAGMAIV
RRRTKEQ

Enzyme Prediction     

No EC number prediction in MGYG000000303_01557.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH136	40	659	1.7e-135	0.9918533604887984

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam13229	Beta_helix	7.11e-05	280	363	9	92	Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ADP35567.1	1.02e-163	40	1036	68	974
ESV34046.1	9.31e-163	40	958	47	950
ADO52688.1	5.72e-162	40	972	34	899
QSG89108.1	1.03e-161	40	958	47	950
VEG79925.1	1.03e-161	40	958	47	950

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
7V6M_A	9.44e-167	35	658	4	574	ChainA, Fibronectin type III domain-containing protein [Tyzzerella nexilis]
5GQC_A	2.05e-129	40	659	18	595	Crystalstructure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_C Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_D Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_E Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_F Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_G Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_H Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQF_A Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, lacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQF_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, lacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQG_A Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, galacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQG_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, galacto-N-biose complex [Bifidobacterium longum subsp. longum]
7V6I_A	2.61e-124	40	659	14	607	ChainA, Lacto-N-biosidase [Bifidobacterium saguini DSM 23967]
6KQT_A	2.56e-94	42	518	247	662	CrystalStructure of GH136 lacto-N-biosidase from Eubacterium ramulus - native protein [Eubacterium ramulus ATCC 29099]
6KQS_A	2.03e-90	42	518	247	662	CrystalStructure of GH136 lacto-N-biosidase from Eubacterium ramulus - selenomethionine derivative [Eubacterium ramulus ATCC 29099]

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000270	0.999060	0.000163	0.000183	0.000158	0.000144

TMHMM  Annotations     

start	end
1178	1200