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CAZyme Information: MGYG000000977_00477

You are here: Home > Sequence: MGYG000000977_00477

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Clostridium sp900539375
Lineage Bacteria; Firmicutes_A; Clostridia; Clostridiales; Clostridiaceae; Clostridium; Clostridium sp900539375
CAZyme ID MGYG000000977_00477
CAZy Family GH39
CAZyme Description HTH-type transcriptional activator RhaS
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
692 MGYG000000977_3|CGC1 81641.41 4.7547
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000977 2927434 MAG Australia Oceania
Gene Location Start: 94269;  End: 96347  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000977_00477.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH39 474 639 2.7e-20 0.3665893271461717

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG2207 AraC 1.33e-25 163 273 13 123
AraC-type DNA-binding domain and AraC-containing proteins [Transcription].
smart00342 HTH_ARAC 8.16e-25 186 269 1 84
helix_turn_helix, arabinose operon control protein.
pfam12833 HTH_18 3.60e-22 192 271 1 81
Helix-turn-helix domain.
COG4753 YesN 7.12e-17 33 273 273 475
Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains [Signal transduction mechanisms, Transcription].
COG4977 GlxA 5.97e-12 188 270 238 320
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AYE35030.1 1.26e-295 1 682 1 685
QAS60424.1 5.09e-295 1 682 1 685
ATD56640.1 9.19e-295 1 682 1 685
QBJ75981.1 9.19e-295 1 682 1 685
SLK21057.1 9.19e-295 1 682 1 685

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3LSG_A 2.55e-11 184 269 17 102
Thecrystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_B The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_C The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_D The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_E The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum]
1BL0_A 1.54e-07 173 272 14 113
MultipleAntibiotic Resistance Protein (Mara)DNA COMPLEX [Escherichia coli]
1XS9_A 1.64e-07 173 272 17 116
ChainA, Multiple antibiotic resistance protein marA [Escherichia coli]
4M29_A 7.43e-06 480 662 291 475
Structureof a GH39 Beta-xylosidase from Caulobacter crescentus [Caulobacter vibrioides CB15]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q8NYT6 5.83e-22 30 656 21 713
Uncharacterized HTH-type transcriptional regulator MW0077 OS=Staphylococcus aureus (strain MW2) OX=196620 GN=MW0077 PE=4 SV=1
Q6GD21 5.83e-22 30 656 21 713
Uncharacterized HTH-type transcriptional regulator SAS0078 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0078 PE=4 SV=1
Q5HJR8 7.70e-22 30 656 21 713
Uncharacterized HTH-type transcriptional regulator SACOL0084 OS=Staphylococcus aureus (strain COL) OX=93062 GN=SACOL0084 PE=4 SV=2
Q99XB1 1.78e-21 30 656 21 713
Uncharacterized HTH-type transcriptional regulator SAV0101 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=SAV0101 PE=4 SV=1
Q7A882 1.78e-21 30 656 21 713
Uncharacterized HTH-type transcriptional regulator SA0097 OS=Staphylococcus aureus (strain N315) OX=158879 GN=SA0097 PE=4 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000052 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000977_00477.