logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000002337_00042

You are here: Home > Sequence: MGYG000002337_00042

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Staphylococcus aureus
Lineage Bacteria; Firmicutes; Bacilli; Staphylococcales; Staphylococcaceae; Staphylococcus; Staphylococcus aureus
CAZyme ID MGYG000002337_00042
CAZy Family GH0
CAZyme Description HTH-type transcriptional activator RhaR
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
745 MGYG000002337_1|CGC1 87948 6.3791
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002337 2749621 Isolate not provided not provided
Gene Location Start: 47481;  End: 49718  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002337_00042.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3664 XynB 0.0 326 743 1 428
Beta-xylosidase [Carbohydrate transport and metabolism].
COG2207 AraC 2.36e-29 139 254 4 119
AraC-type DNA-binding domain and AraC-containing proteins [Transcription].
197666 smart00342 2.80e-25 171 254 1 84
HTH_ARAC helix_turn_helix, arabinose operon control protein.
pfam12833 HTH_18 2.17e-22 177 254 1 79
Helix-turn-helix domain.
COG4977 GlxA 5.93e-20 108 254 175 319
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QSU90195.1 0.0 1 745 1 745
QKL40152.1 0.0 1 745 1 745
QSU54931.1 0.0 1 745 1 745
QSU46932.1 0.0 1 745 1 745
QKL42866.1 0.0 1 745 1 745

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3OOU_A 5.17e-10 157 254 7 104
Thestructure of a protein with unkown function from Listeria innocua [Listeria innocua]
4FE4_A 1.35e-07 118 254 251 384
Crystalstructure of apo E. coli XylR [Escherichia coli K-12],4FE4_B Crystal structure of apo E. coli XylR [Escherichia coli K-12],4FE4_C Crystal structure of apo E. coli XylR [Escherichia coli K-12]
4FE7_A 1.43e-07 118 254 271 404
structureof xylose-binding transcription activator xylR [Escherichia coli]
1D5Y_A 6.22e-07 163 254 11 102
CrystalStructure Of The E. Coli Rob Transcription Factor In Complex With Dna [Escherichia coli],1D5Y_B Crystal Structure Of The E. Coli Rob Transcription Factor In Complex With Dna [Escherichia coli],1D5Y_C Crystal Structure Of The E. Coli Rob Transcription Factor In Complex With Dna [Escherichia coli],1D5Y_D Crystal Structure Of The E. Coli Rob Transcription Factor In Complex With Dna [Escherichia coli]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q99XB1 0.0 1 745 1 745
Uncharacterized HTH-type transcriptional regulator SAV0101 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=SAV0101 PE=4 SV=1
Q5HJR8 0.0 1 745 1 745
Uncharacterized HTH-type transcriptional regulator SACOL0084 OS=Staphylococcus aureus (strain COL) OX=93062 GN=SACOL0084 PE=4 SV=2
Q6GD21 0.0 1 745 1 745
Uncharacterized HTH-type transcriptional regulator SAS0078 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0078 PE=4 SV=1
Q6GKK1 0.0 1 745 1 745
Uncharacterized HTH-type transcriptional regulator SAR0107 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR0107 PE=4 SV=1
Q936F1 0.0 1 745 1 745
Uncharacterized HTH-type transcriptional regulator OS=Staphylococcus aureus OX=1280 PE=4 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000068 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002337_00042.