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CAZyme Information: MGYG000002414_01372
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Paenibacillus odorifer | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes; Bacilli; Paenibacillales; Paenibacillaceae; Paenibacillus; Paenibacillus odorifer | |||||||||||
| CAZyme ID | MGYG000002414_01372 | |||||||||||
| CAZy Family | GH24 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 1560452; End: 1566133 Strand: + | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG3209 | RhsA | 1.72e-28 | 1001 | 1664 | 57 | 659 | Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]. |
| TIGR03696 | Rhs_assc_core | 2.14e-28 | 1585 | 1665 | 1 | 77 | RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain. |
| COG3209 | RhsA | 1.66e-08 | 659 | 1297 | 102 | 674 | Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]. |
| pfam05593 | RHS_repeat | 7.93e-06 | 1129 | 1160 | 1 | 32 | RHS Repeat. RHS proteins contain extended repeat regions. These repeats often appear to be involved in ligand binding. Note that this model may not find all the repeats in a protein and that it covers two RHS repeats. The 3D structure of an RHS-repeat-containing protein (the B and C components of an ABC toxin complex) has been determined. The RHS repeats form an extended strip of beta-sheet that spirals around to form a hollow shell, encapsulating the variable C-terminal domain. |
| pfam05593 | RHS_repeat | 6.54e-05 | 1403 | 1445 | 1 | 36 | RHS Repeat. RHS proteins contain extended repeat regions. These repeats often appear to be involved in ligand binding. Note that this model may not find all the repeats in a protein and that it covers two RHS repeats. The 3D structure of an RHS-repeat-containing protein (the B and C components of an ABC toxin complex) has been determined. The RHS repeats form an extended strip of beta-sheet that spirals around to form a hollow shell, encapsulating the variable C-terminal domain. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AIQ73013.1 | 0.0 | 8 | 1669 | 2 | 1665 |
| AKG34398.1 | 0.0 | 180 | 1669 | 1 | 1485 |
| ATW25288.1 | 2.60e-43 | 1323 | 1670 | 21 | 394 |
| ATW25292.1 | 5.81e-43 | 1403 | 1670 | 21 | 327 |
| ATW25294.1 | 5.15e-37 | 1448 | 1670 | 505 | 725 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 6SUF_F | 1.86e-11 | 1401 | 1666 | 1879 | 2158 | Structureof Photorhabdus luminescens Tc holotoxin pore [Photorhabdus luminescens] |
| 6H6E_F | 1.86e-11 | 1401 | 1666 | 1874 | 2153 | PTC3holotoxin complex from Photorhabdus luminecens in prepore state (TcdA1, TcdB2, TccC3) [Photorhabdus luminescens] |
| 6SUQ_A | 1.86e-11 | 1401 | 1666 | 1879 | 2158 | CrystalStructure of TcdB2-TccC3-TEV [Photorhabdus luminescens] |
| 6SUP_A | 3.13e-11 | 1401 | 1664 | 1837 | 2114 | CrystalStructure of TcdB2-TccC3-Cdc42 [Photorhabdus luminescens] |
| 4O9X_A | 3.14e-11 | 1401 | 1664 | 1913 | 2190 | CrystalStructure of TcdB2-TccC3 [Photorhabdus luminescens] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q07833 | 6.82e-32 | 1431 | 1665 | 1919 | 2187 | tRNA nuclease WapA OS=Bacillus subtilis (strain 168) OX=224308 GN=wapA PE=1 SV=2 |
| G4NYJ6 | 1.17e-31 | 1431 | 1665 | 1919 | 2187 | tRNA3(Ser)-specific nuclease WapA OS=Bacillus spizizenii (strain DSM 15029 / JCM 12233 / NBRC 101239 / NRRL B-23049 / TU-B-10) OX=1052585 GN=wapA PE=1 SV=1 |
| D4G3R4 | 1.96e-29 | 1408 | 1707 | 1987 | 2250 | tRNA(Glu)-specific nuclease WapA OS=Bacillus subtilis subsp. natto (strain BEST195) OX=645657 GN=wapA PE=1 SV=2 |
| P32109 | 4.75e-12 | 1555 | 1671 | 45 | 158 | Putative uncharacterized protein YibJ OS=Escherichia coli (strain K12) OX=83333 GN=yibJ PE=5 SV=3 |
| Q9W6V6 | 2.06e-11 | 796 | 1657 | 1545 | 2394 | Teneurin-1 OS=Gallus gallus OX=9031 GN=TENM1 PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.001547 | 0.997017 | 0.000806 | 0.000247 | 0.000194 | 0.000173 |
