CAZyme Information: MGYG000002473_00295

Basic Information

• Species: Victivallis vadensis
• Lineage: Bacteria; Verrucomicrobiota; Lentisphaeria; Victivallales; Victivallaceae; Victivallis; Victivallis vadensis
• CAZyme ID: MGYG000002473_00295
• CAZy Family: GH0
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
965		107460.55	7.4387

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002473	4576885	Isolate	not provided	not provided

• Gene Location: Start: 24587; End: 27484 Strand: +

Full Sequence      

MKHAFCTAACCGLLLSLGAADRLIIEDFSDVGTWRAWSRQNVTPGKWFGADLVLGATPDA
SRDDGYAGKLRFDFADPGKTGCIEYQRAKASQPEVFVDGVEFDADARGIPGKIRFILEDT
NGKRFATEPVELTGSGWKRYRSEAGRKAEEFTPPFKLYRLRFEASGVSGNNYILIDDIAL
TGGVSRKRKVSIRPVLAPLATEPGKPGKTAYQLRSASEQPIEGKVTYRLFNRHDKCVMEK
TLPVKLAPFGSAVTEIDLPPLAEGSYHASCEFVSGKIRTDYPDWVGVFRPNNGRNNDTPM
WFGIQDTVIWNCEAENELHNQWKKQAGFDIERFGITGNRIDDGDVNNLPAVRKFLDSYRQ
LGMLCCFSYTEGVPAVTQNTPKHRGAPTNSAQFRKHMDKVFGCIRPFEPVRYFEFWNEPD
LDFYNGTIDEYLTALKVVHDSRNAVAPGIKITTGGVTILHPREKKNFSRDVYARGKGLYD
IACFHAHGSLMNYSERQEMVEKWLGEAGVDLPVCNTETGDRAGYAADTIRRQAETLVRKI
VYAKSRNTEFYIWFTLQDYWDMDPEADDSFGLVTSDNRPKPSFVAYNELIRQLGSTGRGE
LLKNTGELDIYRFLSSDGKREVLALWPRIGGTRHLLPLEGSGELAAVDLYGRPVPAKVQY
NYAAIPVEDAMYVSFPAGAFRYGSAVAAQKQTVGGSAGTDARVELTVRNPFPQAAQVEFD
GGRRSLKAAETATLPVRLPIPADARNGIFTTEKKLRLASGNETLELTVPVTVNVSYPVAS
GRKPAQELVLDTLDRVNEMSFDPNIRRWMGPKDLSCRFAMTRENGNLNLDIRVTDDRHVM
NSTPDEAWKDDSIQVGFATLDGKFTEVTLSGKDGKGAVYAHHAPDPALRNEWKVPAKVTR
TGDVTHYEVSLPLAKLGIPDKTGTLFRFSFLVNENDGKGRIRWIEWMGGIGRAKNPDEFG
WGILK

Enzyme Prediction     

No EC number prediction in MGYG000002473_00295.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd09621	CBM9_like_5	3.17e-56	787	964	2	188	DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily are often located at the C-terminus of longer proteins and may co-occur with various other functional domains such as glycosyl hydrolases. The CBM9 module in these architectures may be involved in binding to carbohydrates.
cd09619	CBM9_like_4	6.48e-09	808	962	30	181	DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily are often located at the C-terminus of longer proteins and may co-occur with various other domains.
pfam06452	CBM9_1	1.36e-06	806	965	19	182	Carbohydrate family 9 binding domain-like. CBM9_1 is a C-terminal domain on bacterial xylanase proteins, and it is tandemly repeated in a number of family-members. The CBM9 module binds to amorphous and crystalline cellulose and a range of soluble di- and monosaccharides as well as to cello- and xylo- oligomers of different degrees of polymerization. Comparison of the glucose and cellobiose complexes during crystallisation reveals surprising differences in binding of these two substrates by CBM9-2. Cellobiose was found to bind in a distinct orientation from glucose, while still maintaining optimal stacking and electrostatic interactions with the reducing end sugar.
cd00241	DOMON_like	2.18e-06	800	946	4	158	Domon-like ligand-binding domains. DOMON-like domains can be found in all three kindgoms of life and are a diverse group of ligand binding domains that have been shown to interact with sugars and hemes. DOMON domains were initially thought to confer protein-protein interactions. They were subsequently found as a heme-binding motif in cellobiose dehydrogenase, an extracellular fungal oxidoreductase that degrades both lignin and cellulose, and in ethylbenzene dehydrogenase, an enzyme that aids in the anaerobic degradation of hydrocarbons. The domain interacts with sugars in the type 9 carbohydrate binding modules (CBM9), which are present in a variety of glycosyl hydrolases, and it can also be found at the N-terminus of sensor histidine kinases.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AVM46271.1	0.0	1	964	1	965
AHF91202.1	1.56e-172	20	965	30	1042
AHF91198.1	1.10e-168	20	965	30	1043
AHF92778.1	8.38e-148	23	961	214	1174
AVM46501.1	1.05e-145	22	961	195	1150

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.001327	0.884798	0.113025	0.000294	0.000261	0.000248

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002473_00295.