dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000002533_02896

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Basic Information help

Species

Vibrio vulnificus

Lineage

Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Vibrionaceae; Vibrio; Vibrio vulnificus

CAZyme ID

MGYG000002533_02896

CAZy Family

GH18

CAZyme Description

hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
950		104684.86	4.2109

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002533	4933179	Isolate	Bangladesh	Asia

Gene Location

Start: 242679; End: 245531 Strand: -

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000002533_02896.

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
GH18	617	930	3.9e-25	0.9358108108108109

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam00704	Glyco_hydro_18	1.73e-12	617	927	1	305	Glycosyl hydrolases family 18.
cd00598	GH18_chitinase-like	5.65e-11	619	928	2	209	The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are included in this alignment model.
pfam17957	Big_7	2.01e-10	517	583	1	67	Bacterial Ig domain. This entry represents a bacterial ig-like domain that is found in glycosyl hydrolase enzymes.
smart00636	Glyco_18	1.48e-08	617	886	1	232	Glyco_18 domain.
pfam17957	Big_7	3.81e-04	421	491	1	67	Bacterial Ig domain. This entry represents a bacterial ig-like domain that is found in glycosyl hydrolase enzymes.

CAZyme Hits help

Hit ID	Query Start	Query End	Hit Start	Hit End
ADV86240.1	1	950	1	950
BAC94761.1	1	950	1	950
QBH26903.1	1	950	1	950
AAO10717.1	1	950	1	950
QBN14343.1	1	950	1	950

PDB Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3PDD_A	1.93e-10	421	606	2	182	ChainA, Glycoside hydrolase, family 9 [Acetivibrio thermocellus ATCC 27405]
3PE9_A	4.37e-06	516	606	1	90	ChainA, Fibronectin(III)-like module [Acetivibrio thermocellus],3PE9_B Chain B, Fibronectin(III)-like module [Acetivibrio thermocellus],3PE9_C Chain C, Fibronectin(III)-like module [Acetivibrio thermocellus],3PE9_D Chain D, Fibronectin(III)-like module [Acetivibrio thermocellus]

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P96156	5.38e-17	352	578	34	255	Chitodextrinase OS=Vibrio furnissii OX=29494 GN=endo I PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000492	0.998631	0.000210	0.000259	0.000207	0.000185

TMHMM Annotations help

There is no transmembrane helices in MGYG000002533_02896.