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CAZyme Information: MGYG000002534_00113

You are here: Home > Sequence: MGYG000002534_00113

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Citrobacter_A farmeri
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter_A; Citrobacter_A farmeri
CAZyme ID MGYG000002534_00113
CAZy Family GT73
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
284 MGYG000002534_1|CGC5 32291.95 8.6392
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002534 5715629 Isolate Australia Oceania
Gene Location Start: 116598;  End: 117452  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002534_00113.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT73 18 256 2e-93 0.9877551020408163

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK09822 PRK09822 9.21e-144 1 268 1 268
lipopolysaccharide core biosynthesis protein; Provisional
TIGR04437 WaaZ_KDO_III 8.32e-142 6 256 1 251
Kdo-III transferase WaaZ. Members of this family are WaaZ, or Kdo-III transferase. This enzyme, present in some strains of E. coli and its allies but not others, performs a non-stoichiometric addition of a third 3-deoxy-D-manno-oct-2-ulosonic acid (KDO-III) onto some fraction of KDO-II in the lipopolysaccharide (LPS) inner core. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AST77686.1 3.74e-206 1 284 1 284
QZE44925.1 1.03e-203 1 284 1 284
AKE60609.1 7.78e-199 1 284 1 284
QFS69388.1 2.23e-198 1 284 1 284
AMG92626.1 7.99e-192 1 284 1 284

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P27241 2.50e-124 1 265 1 265
Lipopolysaccharide core biosynthesis protein RfaZ OS=Escherichia coli (strain K12) OX=83333 GN=rfaZ PE=4 SV=2
P26473 1.02e-122 1 259 1 259
Lipopolysaccharide core biosynthesis protein RfaZ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=rfaZ PE=4 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000063 0.000002 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002534_00113.