CAZyme Information: MGYG000002668_01235

Basic Information

• Species: Prevotella sp900552965
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Prevotella; Prevotella sp900552965
• CAZyme ID: MGYG000002668_01235
• CAZy Family: PL11
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1528		165592.19	4.9541

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002668	2820424	MAG	United Republic of Tanzania	Africa

• Gene Location: Start: 144; End: 4730 Strand: -

Full Sequence      

MKQILTFLFLMLAILPSSAQRRIDKLDRGLIGIKVDAGVFLSWRIQSDEYYDVKYNLYRN
GTRIAENLNVSNFTDKGGSVDNTYTVAAVVRGKEQTQCKAIKPWAQNYFEISPKHDSSLK
CTYVPNDACCADVDGDGVVEILLKYDNQQEREQLYPKQGPTMSGADTKEYTLFEVLKLDG
TVLWWVNCGPNMGDFQNNEQNIVGYDWDQDGKSEVLMRLAEGSEIHMADGTTYKIGADGK
NGTSWTNYRQPKASGSVEWFTHYGNEFLVYCNGTTGKPYQCIDFPLKRYEAGETDLSKAW
GDGYGHRSSKYFFGAPYLDGRHPSIFLGRGIYTRHKFVAFDVDPNTHELTERWRWTNNQP
GSPWYGQGYHNYAIVDVDWDGRDEIVWGSMVIDDNGMGLSTTGLGHGDAQHHGDLDPYTY
GQQGFFCNEDRPSNNYRDLITSKIRHRATGGNDDGRSIAGNFCNDMPGAMGFSAHDNPVS
CVTGNVESTLSKDGVGMNFRIYWDGDLQEEGFNDVSVSKYKKGVIATMTGAYSNNSTKAT
PTFMGDILGDWREEIIERTADNKLRIFTTTTETPWRNYSLWYDKQYRNGMVWEMCGYNQP
PHVSYFLGELEGITMAPPPETMTGRKEIANGGTIGSDDEVLITCETNDMTVNVQDGATPY
LYIDNAPSWVQGSAKSESTAKEYPITYTYYTHTLTGGAFAGEMRLIKQGAGDLILPDVVQ
TYKGNTDVWAGTLTFNGTLQNSRLWLNRLTNLNTDGGKFEKSIQADYGSVIRIGGEEKKA
SSITTDSLNLGFGAIVELDLFSDGQQADQINANVLKVEKKVWPNGGGPVYDTPVFRFKAH
AADGTSKIADGNYVIGSIAKVEGNISDIVIEGMSNHKTSLSVNDGKLVLSVKGYEAKDLV
WSGGKGTVLDLDNTANLNDAESGEESVFVIGSDILFPATASNYNVVVSNAHGAVSANSIT
FDNASKPYYLSGDSIVGAPTVTKKGDGSVYINNENRTGNTYITQGNLYVSSLANTTGTDY
GALGDKSKVINISNGARLGISNTLVSDQAISVGEGGAGVTVANGATFTQNAAVTGGSGTT
FTKTGEGTFAMPSSFAPSTLSIVGGTVNGYDSKGPANIDFRGGTYSDSNSEGTYSKLSSN
FIVEKGQTGKLILDPRCQYVGKLTGEGTLTVVAGGARNTLEGNWSAFAGEIIVQGQKRGT
YDPSFDWKNNYGLPNATLNVQSGYEFKTNGNNVAVKNLKAGASGKITGGGIIILGENYDG
DINLSNYVENEIEYRGMESRELRITTANAGRVSKKITVKSGALRFTGSSSNQTKCNGNNI
ILVEKSGKVYGGNALFHAVQVADGGEFSITGTSDAPTTITTSENAIDIIKGGAVLDFKLK
SADKYSYLNCKGTLTFYTGGILRVRLDDGFTPAAGSEFKLWTANTISGVTEEKVVLDLPV
LPAGLKWETTALYDKEGVLRVVKDDASSIDSLPADAAIEGEVFTVDGKCLGRISTTKADL
HRAVKALVSARGNYVVRTQDACGVVNIK

Enzyme Prediction     

No EC number prediction in MGYG000002668_01235.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL11	20	627	6.2e-146	0.9653465346534653

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd10318	RGL11	1.01e-152	23	605	1	564	Rhamnogalacturonan lyase of the polysaccharide lyase family 11. The rhamnogalacturonan lyase of the polysaccharide lyase family 11 (RGL11) cleaves glycoside bonds in polygalacturonan as well as RG (rhamnogalacturonan) type-I through a beta-elimination reaction. Functionally characterized members of this family, YesW and YesX from Bacillus subtilis, cleave glycoside bonds between rhamnose and galacturonic acid residues in the RG-I region of plant cell wall pectin. YesW and YesX work synergistically, with YesW cleaving the glycoside bond of the RG chain endolytically, and YesX converting the resultant oligosaccharides through an exotype reaction. This domain is sometimes found in architectures with non-catalytic carbohydrate-binding modules (CBMs). There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain through a beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11.
pfam18370	RGI_lyase	7.39e-31	21	104	1	86	Rhamnogalacturonan I lyases beta-sheet domain. This is the beta-sheet domain found in rhamnogalacturonan (RG) lyases, which are responsible for an initial cleavage of the RG type I (RG-I) region of plant cell wall pectin. Polysaccharide lyase family 11 carrying this domain, such as YesW (EC:4.2.2.23) and YesX (EC:4.2.2.24), cleave glycoside bonds between rhamnose and galacturonic acid residues in RG-I through a beta-elimination reaction. Other family members carrying this domain are hemagglutinin A, lysine gingipain (Kgp) and Chitinase C (EC:3.2.1.14).
PRK09752	PRK09752	0.002	906	1109	469	692	AIDA-I family autotransporter YfaL.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QIM09959.1	0.0	17	1523	8	1533
AGB29439.1	0.0	15	1521	17	1512
BCS86257.1	5.11e-266	24	891	3	866
ABN51485.1	3.34e-118	16	620	253	813
ADU75030.1	3.34e-118	16	620	253	813

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
2Z8R_A	3.94e-114	19	623	1	582	Crystalstructure of rhamnogalacturonan lyase YesW at 1.40 A resolution [Bacillus subtilis],2Z8R_B Crystal structure of rhamnogalacturonan lyase YesW at 1.40 A resolution [Bacillus subtilis],2Z8S_A Crystal structure of rhamnogalacturonan lyase YesW complexed with digalacturonic acid [Bacillus subtilis],2Z8S_B Crystal structure of rhamnogalacturonan lyase YesW complexed with digalacturonic acid [Bacillus subtilis],2ZUX_A Crystal structure of rhamnogalacturonan lyase YesW complexed with rhamnose [Bacillus subtilis],2ZUX_B Crystal structure of rhamnogalacturonan lyase YesW complexed with rhamnose [Bacillus subtilis]
4CAG_A	1.20e-104	15	609	3	577	Bacilluslicheniformis Rhamnogalacturonan Lyase PL11 [Bacillus licheniformis]
2ZUY_A	2.68e-102	20	619	5	599	Crystalstructure of exotype rhamnogalacturonan lyase YesX [Bacillus subtilis]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
O31526	5.00e-113	19	623	38	619	Rhamnogalacturonan endolyase YesW OS=Bacillus subtilis (strain 168) OX=224308 GN=yesW PE=1 SV=1
O31527	1.18e-101	20	619	5	599	Rhamnogalacturonan exolyase YesX OS=Bacillus subtilis (strain 168) OX=224308 GN=yesX PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000205	0.999201	0.000157	0.000149	0.000136	0.000128

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002668_01235.