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CAZyme Information: MGYG000003387_02099
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Pseudomonas_R sp900766265 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas_R; Pseudomonas_R sp900766265 | |||||||||||
| CAZyme ID | MGYG000003387_02099 | |||||||||||
| CAZy Family | GT19 | |||||||||||
| CAZyme Description | Lipid-A-disaccharide synthase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 400282; End: 401412 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GT19 | 6 | 354 | 6.7e-139 | 0.9830508474576272 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK00025 | lpxB | 0.0 | 4 | 376 | 2 | 378 | lipid-A-disaccharide synthase; Reviewed |
| COG0763 | LpxB | 3.57e-175 | 1 | 375 | 1 | 381 | Lipid A disaccharide synthetase [Cell wall/membrane/envelope biogenesis]. |
| pfam02684 | LpxB | 1.09e-139 | 6 | 369 | 1 | 374 | Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide. |
| TIGR00215 | lpxB | 1.09e-132 | 6 | 372 | 8 | 385 | lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides] |
| PRK01021 | lpxB | 3.17e-61 | 8 | 323 | 231 | 551 | lipid-A-disaccharide synthase; Reviewed |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QXY93949.1 | 6.60e-219 | 2 | 374 | 3 | 375 |
| AFN78848.1 | 1.89e-218 | 2 | 375 | 3 | 376 |
| QGZ32014.1 | 2.20e-217 | 2 | 376 | 3 | 377 |
| QLC74181.1 | 3.63e-216 | 4 | 375 | 5 | 376 |
| QLC76952.1 | 3.63e-216 | 4 | 375 | 5 | 376 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5W8N_A | 2.97e-119 | 2 | 374 | 5 | 382 | LipidA Disaccharide Synthase (LpxB)-6 solubilizing mutations [Escherichia coli BL21(DE3)] |
| 5W8S_A | 2.97e-119 | 2 | 374 | 5 | 382 | LipidA Disaccharide Synthase (LpxB)-7 solubilizing mutations [Escherichia coli BL21(DE3)],5W8X_A Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations-Bound to UDP [Escherichia coli BL21(DE3)] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| A4XWS8 | 1.55e-211 | 2 | 376 | 3 | 377 | Lipid-A-disaccharide synthase OS=Pseudomonas mendocina (strain ymp) OX=399739 GN=lpxB PE=3 SV=1 |
| Q02RB5 | 6.24e-202 | 4 | 375 | 5 | 377 | Lipid-A-disaccharide synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) OX=208963 GN=lpxB PE=3 SV=1 |
| Q9HXY8 | 1.78e-201 | 4 | 375 | 5 | 377 | Lipid-A-disaccharide synthase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=lpxB PE=3 SV=1 |
| B7V7U5 | 1.78e-201 | 4 | 375 | 5 | 377 | Lipid-A-disaccharide synthase OS=Pseudomonas aeruginosa (strain LESB58) OX=557722 GN=lpxB PE=3 SV=1 |
| A6V1E5 | 3.60e-201 | 3 | 375 | 4 | 377 | Lipid-A-disaccharide synthase OS=Pseudomonas aeruginosa (strain PA7) OX=381754 GN=lpxB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000042 | 0.000027 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |