CAZyme Information: MGYG000003396_02351

Basic Information

• Species: Clostridium sp900766315
• Lineage: Bacteria; Firmicutes_A; Clostridia; Clostridiales; Clostridiaceae; Clostridium; Clostridium sp900766315
• CAZyme ID: MGYG000003396_02351
• CAZy Family: GH39
• CAZyme Description: HTH-type transcriptional activator RhaS

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
688	MGYG000003396_122|CGC1	81617.25	4.64

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003396	3926186	MAG	United States	North America

• Gene Location: Start: 339; End: 2405 Strand: -

Full Sequence      

MRREYINYPFELPIKISYLNIKNYPTHWHNSIEIIYVLKGSLHIKIDTDSFTLNEREVEI
INSDESHEIQGIDDNKVLIFNIDPFFFEKYYKDINNIFFYTNSNEYEDQNGPEYEELKTF
LSQMLCEYVQKLEDYDEEIEEILITLLYHLVNNFHYLTHEKEELKEKTDQLARYHRISKY
IYNNYNNNITLQEIAKKEFLSPHYLSHEIKYATGYSFTDLINLTRVEESIKLLLDSDMSI
SEISDEIGFSHVRYFNKNFKYYYNCTPLQYRKKYATTEKEYELSKQYIELSLSDALESLS
YSLENYNRFNFENKLWNIHVDVDKILYPLEKDFKECINLGESFDLLIEDNKDILEEIQEE
IHFEYGRLEKMFHSDMGVFLDSDFYNWNKAKGVLEFLSNIYLKPLILLDNLDYSLEKYIN
ILSSFLDYFTELDIVEVSEFKFQFDSRLSADIKNNLRDYIKNSYELEVSEMDFTCKSDLN
SLYDTAYMLPYIIHNTIFKGNSLNFLKAFDVLEKEINITNEVFIGAPGIVNDMGIRKPSY
YAYYLLSKLGNDIIALDDGYIVTKSDNSYAILLYSHNDDVNTLVSYEDIYQQGGVKKSFE
RKYSLNIVNIKNSTRIITYELNESIGSSYNYWLAMGSPDRLAKEEKEILHKASYPKIEFK
YSKKSSVLNIITELKGYGAKLIVLKNIK

Enzyme Prediction     

No EC number prediction in MGYG000003396_02351.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH39	473	641	6.8e-18	0.37354988399071926

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
smart00342	HTH_ARAC	2.96e-21	190	271	3	84	helix_turn_helix, arabinose operon control protein.
pfam12833	HTH_18	3.16e-19	194	273	1	81	Helix-turn-helix domain.
COG2207	AraC	4.41e-19	190	274	38	122	AraC-type DNA-binding domain and AraC-containing proteins [Transcription].
COG4753	YesN	8.54e-11	190	275	390	475	Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains [Signal transduction mechanisms, Transcription].
pfam01229	Glyco_hydro_39	1.74e-07	480	658	268	460	Glycosyl hydrolases family 39.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ATD56640.1	0.0	1	688	1	689
QBJ75981.1	0.0	1	688	1	689
SLK21057.1	0.0	1	688	1	689
ATD55683.1	0.0	1	688	1	689
AYE35030.1	0.0	1	688	1	689

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3LSG_A	4.18e-10	190	272	21	103	Thecrystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_B The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_C The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_D The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_E The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum]
4M29_A	1.40e-06	480	666	289	477	Structureof a GH39 Beta-xylosidase from Caulobacter crescentus [Caulobacter vibrioides CB15]
4EKJ_A	1.85e-06	480	666	289	477	ChainA, Beta-xylosidase [Caulobacter vibrioides]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q5HJR8	3.63e-16	30	658	21	713	Uncharacterized HTH-type transcriptional regulator SACOL0084 OS=Staphylococcus aureus (strain COL) OX=93062 GN=SACOL0084 PE=4 SV=2
Q6GKK1	6.33e-16	30	658	21	713	Uncharacterized HTH-type transcriptional regulator SAR0107 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR0107 PE=4 SV=1
Q7A882	1.92e-15	30	658	21	713	Uncharacterized HTH-type transcriptional regulator SA0097 OS=Staphylococcus aureus (strain N315) OX=158879 GN=SA0097 PE=4 SV=1
Q6GD21	1.92e-15	30	658	21	713	Uncharacterized HTH-type transcriptional regulator SAS0078 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0078 PE=4 SV=1
Q8NYT6	1.92e-15	30	658	21	713	Uncharacterized HTH-type transcriptional regulator MW0077 OS=Staphylococcus aureus (strain MW2) OX=196620 GN=MW0077 PE=4 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000054	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000003396_02351.