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CAZyme Information: MGYG000004598_00996

You are here: Home > Sequence: MGYG000004598_00996

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus;
CAZyme ID MGYG000004598_00996
CAZy Family CBM13
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
514 54104.28 8.4399
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004598 1864052 MAG France Europe
Gene Location Start: 53907;  End: 55451  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004598_00996.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL9 195 486 1.6e-69 0.7967914438502673
CBM13 35 132 4.2e-19 0.5

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam14200 RicinB_lectin_2 4.92e-20 34 116 8 89
Ricin-type beta-trefoil lectin domain-like.
pfam14200 RicinB_lectin_2 1.33e-17 74 164 1 89
Ricin-type beta-trefoil lectin domain-like.
pfam00652 Ricin_B_lectin 1.75e-10 40 174 2 126
Ricin-type beta-trefoil lectin domain.
cd00161 RICIN 7.57e-09 39 176 1 124
Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
cd00161 RICIN 2.83e-08 35 127 40 123
Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ADU21671.1 1.56e-181 2 514 5 525
ADL35876.1 3.64e-145 3 514 6 510
ACR72725.1 1.29e-133 217 514 2 299
ACZ98652.1 5.71e-106 214 509 33 328
CDM69960.1 1.18e-96 214 514 249 550

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5OLQ_A 2.39e-12 344 502 189 361
Rhamnogalacturonanlyase [Bacteroides thetaiotaomicron],5OLQ_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLQ_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLS_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.001138 0.997807 0.000301 0.000282 0.000227 0.000198

TMHMM  Annotations      download full data without filtering help

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