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carrageenan
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Water-soluble linear sulfated galactans from red seaweeds. They consist of repeating disaccharide units with alternating 3-linked β−d-galactopyranose and 4-linked α-galactopyranose or 3, 6-anhydro- α-galactopyranose. Between the units are α-1,3 glycosidic bonds. kappa, iota, and lambda carrageenan are three main types based on the number of sulfate groups on the repeating disaccharide units.
References
Li, J., He, Z., Liang, Y., Peng, T. and Hu, Z., 2022. Insights into Algal Polysaccharides: A Review of Their Structure, Depolymerases, and Metabolic Pathways. Journal of Agricultural and Food Chemistry, 70(6), pp .1749-1765. Click here to redirect detail information.
Zia, K. M., Tabasum, S., Nasif, M., Sultan, N., Aslam, N., Noreen, A., & Zuber, M. (2017). A review on synthesis, properties and applications of natural polymer based carrageenan blends and composites. International journal of biological macromolecules, 96, 282–301. Click here to redirect detail information.
CAZyme Gene Cluster:
| Substrate | Genome_ID | CGC_ID | CGC_Content | PUL_ID | Species Name |
|---|---|---|---|---|---|
| carrageenan | MGYG000000003 | MGYG000000003_8|CGC1 |
1.B.14.6.1,8.A.46.1.3,null,GH110,GH110,null,null,GH110
|
PUL0149 | Alistipes shahii |
| carrageenan | MGYG000000284 | MGYG000000284_35|CGC1 |
8.A.46.1.3,1.B.14.6.1,FecR,GerE,1.A.1.24.3,GH110,null,1.B.14.6.1,8.A.46.1.3
|
PUL0149 | Parabacteroides sp900540715 |
| carrageenan | MGYG000000437 | MGYG000000437_2|CGC1 |
8.A.46.3.2,1.B.14.6.1,GH43|GH16|GH43_24,GH110,GH110
|
PUL0149 | Alistipes sp001941065 |
| carrageenan | MGYG000000722 | MGYG000000722_15|CGC1 |
GH110,null,8.A.46.1.3,1.B.14.6.1
|
PUL0149 | RC9 sp900545245 |
| carrageenan | MGYG000001420 | MGYG000001420_2|CGC8 |
GH110,GH110,GH43|GH16|GH43_24,1.B.14.6.1,8.A.46.3.2
|
PUL0149 | Alistipes senegalensis |
| carrageenan | MGYG000001546 | MGYG000001546_5|CGC9 |
GH110,GH110,GH43|GH43_24|GH16,1.B.14.6.1
|
PUL0149 | Alistipes provencensis |
| carrageenan | MGYG000001562 | MGYG000001562_14|CGC3 |
GH110,GH110,GH43_24|GH43|GH16,1.B.14.6.1,8.A.46.3.2
|
PUL0149 | Alistipes timonensis |
| carrageenan | MGYG000001591 | MGYG000001591_104|CGC1 |
CBM66|GH51,null,null,2.A.1.1.3,GH127,null,GH127
|
PUL0148 | Parabacteroides timonensis |
| carrageenan | MGYG000001995 | MGYG000001995_27|CGC1 |
GH127,null,GH127,2.A.1.1.55,null,null,GH51|CBM66
|
PUL0148 | Parabacteroides sp900541965 |
| carrageenan | MGYG000002418 | MGYG000002418_1|CGC24 |
GH127,null,GH127,2.A.1.1.3,null,null,CBM66|GH51
|
PUL0148 | Parabacteroides chinchillae |
| carrageenan | MGYG000002455 | MGYG000002455_14|CGC3 |
GH92,GH3,HTH_AraC+HTH_AraC,1.B.14.6.1,null,null,GH110,null,GH110,null,null,GH110
|
PUL0149 | Bacteroides cellulosilyticus |
| carrageenan | MGYG000002472 | MGYG000002472_1|CGC15 |
GH39,2.A.1.3.30,null,null,GH36,null,HTH_AraC+HTH_AraC,2.A.1.2.93,GH127,HTH_AraC,GH146,null,2.A.2.3.3
|
PUL0148 | Lentilactobacillus kefiri |
| carrageenan | MGYG000002549 | MGYG000002549_1|CGC7 |
1.B.14.6.1,FecR,FecR,1.B.14.6.1,null,null,CBM32,Sigma70_r2+Sigma70_r4_2,GH110
|
PUL0149 | Bacteroides caccae |
| carrageenan | MGYG000002878 | MGYG000002878_1|CGC1 |
GH110,null,8.A.46.1.3,null,1.B.14.6.1
|
PUL0149 | RC9 sp900546395 |
| carrageenan | MGYG000003693 | MGYG000003693_28|CGC1 |
2.A.58.2.2,GH110,null,1.B.14.6.1
|
PUL0149 | Phocaeicola plebeius |
| carrageenan | MGYG000003701 | MGYG000003701_15|CGC1 |
GH110,null,8.A.46.1.3,1.B.14.6.1
|
PUL0149 | Parabacteroides sp003480915 |
| carrageenan | MGYG000003989 | MGYG000003989_7|CGC1 |
GH110,GH110,GH43|GH16|GH43_24,1.B.14.6.1
|
PUL0149 | Alistipes sp002161445 |
| carrageenan | MGYG000004050 | MGYG000004050_1|CGC1 |
1.B.14.6.1,null,8.A.46.1.3,null,GH110
|
PUL0149 | |
| carrageenan | MGYG000004116 | MGYG000004116_23|CGC1 |
3.A.1.1.11,3.A.1.1.34,GH36,null,GH110,SBP_bac_1,GH110,null,HTH_3,2.A.88.3.1
|
PUL0149 | |
| carrageenan | MGYG000004658 | MGYG000004658_55|CGC3 |
GH97,LacI,null,1.B.14.6.1,8.A.46.1.6,GH110,GH110
|
PUL0149 | Alistipes finegoldii |